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使用单细胞RNA测序揭示免疫淋巴细胞前体

Usage of Single-Cell RNA Sequencing to Unveil Immune Lymphoid Cell Precursors.

作者信息

Yu Yong, Liu Pengtao

机构信息

Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China.

LKS Faculty of Medicine, School of Biomedical Sciences, The University of Hong Kong, Hong Kong, China.

出版信息

Methods Mol Biol. 2019;1884:73-86. doi: 10.1007/978-1-4939-8885-3_5.

Abstract

Single-cell RNA sequencing (scRNA-seq) is a powerful tool to study immune cells, which enables an unbiased way to discover novel cell populations, biological meaningful cellular heterogeneity, and cell lineage development trajectories. Advances in scRNA-seq technologies and computational data analysis have driven a revolution in our understanding of the immune system in health and disease. Technically, the key step for scRNA-seq analysis is making a high-quality cDNA library for sequencing. Here, we describe a plate-based protocol to prepare single-cell cDNA library of bone marrow innate lymphoid precursors for next generation sequencing-based transcriptome analysis.

摘要

单细胞RNA测序(scRNA-seq)是研究免疫细胞的强大工具,它能以无偏倚的方式发现新的细胞群体、具有生物学意义的细胞异质性以及细胞谱系发育轨迹。scRNA-seq技术和计算数据分析的进展推动了我们对健康和疾病状态下免疫系统理解的一场革命。从技术上讲,scRNA-seq分析的关键步骤是制备用于测序的高质量cDNA文库。在此,我们描述一种基于平板的方案,用于制备骨髓先天性淋巴细胞前体的单细胞cDNA文库,以进行基于新一代测序的转录组分析。

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