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转录组分析揭示了金字塔贻贝(Tectus pyramis Born)外套膜组织中与生物矿化相关的潜在基因

Transcriptome analysis of mantle tissues reveals potential biomineralization-related genes in Tectus pyramis Born.

机构信息

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China.

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China.

出版信息

Comp Biochem Physiol Part D Genomics Proteomics. 2019 Mar;29:131-144. doi: 10.1016/j.cbd.2018.11.010. Epub 2018 Nov 15.

Abstract

The marine mollusk Tectus pyramis is a valuable shellfish primarily distributed in the tropical waters of the South China Sea, as well as in the Indo-Pacific Ocean and areas near the southern portion of the Japanese Peninsula. Despite major economic interest in this mollusk, limited genomic resources are available for this species, which has prevented studies of the molecular mechanism, such as biomineralization. Here, we report the first comprehensive transcript dataset of T. pyramis mantle tissue. From a total of 16,801,141 reads, 173,671 unique transcripts were assembled, which provides new genomic resources for the understanding of biomineralization in T. pyramis. The most abundant unique sequences of the top 30 most highly expressed genes were annotated as shematrin, while other highly expressed genes included glycine-rich protein and shematrin-1. Based on transcriptome annotation and Gene Ontology classification, 130 biomineralization-related genes were found including members of the BMP (bone morphogenetic proteins), calmodulin, perlucin, and shematrin families, as well as mantle genes, nacrein, and MSI60. The results of qPCR showed that 14 of 24 examined genes were highly expressed in the mantle. A phylogenetic tree of BMP, perlucin, shematrin proteins revealed conservation of their structure and functions and indicated that some members participated in biomineralization in T. pyramis. Taken together, the results presented herein will be useful in studies of molecular mechanisms and pathways of biomineralization in T. pyramis, as well as provide new insight into the mechanisms of biomineralization in gastropods.

摘要

海洋软体动物 Tectus pyramis 是一种有价值的贝类,主要分布在中国南海的热带水域,以及印度-太平洋和日本半岛南部附近的地区。尽管人们对这种软体动物有很大的经济兴趣,但该物种的基因组资源有限,这阻碍了对分子机制(如生物矿化)的研究。在这里,我们报告了 T. pyramis 套膜组织的第一个综合转录数据集。在总共 16801141 个读取中,组装了 173671 个独特的转录本,为理解 T. pyramis 的生物矿化提供了新的基因组资源。前 30 个高表达基因中最丰富的独特序列被注释为 shematrin,而其他高表达基因包括富含甘氨酸的蛋白和 shematrin-1。基于转录组注释和基因本体论分类,发现了 130 个与生物矿化相关的基因,包括 BMP(骨形态发生蛋白)、钙调蛋白、perlucin 和 shematrin 家族的成员,以及套膜基因、nacrein 和 MSI60。qPCR 的结果表明,24 个检查基因中的 14 个在套膜中高度表达。BMP、perlucin、shematrin 蛋白的系统发育树揭示了它们结构和功能的保守性,并表明一些成员参与了 T. pyramis 的生物矿化。总之,本文的结果将有助于研究 T. pyramis 生物矿化的分子机制和途径,并为研究腹足动物的生物矿化机制提供新的见解。

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