Cui Yingshun, Chun Seong-Jun, Cho A-Ra, Wong Shu Kuan, Lee Hyung-Gwan, Oh Hee-Mock, Ahn Chi-Yong
Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
University of Science and Technology (UST), 217 Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea.
Antonie Van Leeuwenhoek. 2019 May;112(5):723-729. doi: 10.1007/s10482-018-1206-6. Epub 2018 Nov 30.
A novel Gram-stain negative, rod-shaped and motile bacterial strain, designated strain Seoho-38, was isolated from a eutrophic lake in South Korea. Polyphasic taxonomic studies were performed to investigate the taxonomic position of the new isolate. The phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain Seoho-38 formed a distinct cluster with Nevskia ramosa Soe1, Nevskia persephonica G6M-30, Nevskia soli GR15-1, Nevskia terrae KIS13-15 and Nevskia aquatilis F2-63 with bootstrap resampling value of 100%. Of those Nevskia strains, the new isolate shows high sequence similarity with N. ramosa Soe1 (98.7%) and N. persephonica G6M-30 (97.2%), and values lower than 96.5% with the other type strains. The new isolate was observed to grow aerobically in 0-1.5% (w/v) NaCl (optimum 0%), at pH 7.0-9.0 (optimum pH 7.0) and temperature 15-36 °C (optimum 20-30 °C) on R2A medium. DNA-DNA relatedness values between strain Seoho-38 and the type strains of reference species in the genus Nevskia were < 24%. The genomic DNA G + C content was determined to be 67.4 mol%. Ubiquinone-8 (Q-8) (95%) and ubiquinone-7 (Q-7) (5%) were identified as the respiratory quinones. The cellular polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, a phosphoaminolipid, two glycolipids, an aminolipid and four unidentified lipids. The major fatty acid components were found to include summed feature 3 (Cω7c and/or Cω6c), summed feature 8 (Cω7c and/or Cω6c), C and C. Based on the above polyphasic evidence, strain Seoho-38 (= KCTC 52221 = JCM 31888) represents a new species of the genus Nevskia, for which the name Nevskia lacus sp. nov. is proposed.
从韩国一个富营养化湖泊中分离出一株新型革兰氏阴性、杆状且具运动性的细菌菌株,命名为Seoho-38菌株。进行了多相分类研究以探究该新分离菌株的分类地位。基于16S rRNA基因序列的系统发育分析表明,Seoho-38菌株与拉莫萨涅夫斯基菌Soe1、珀尔塞福涅涅夫斯基菌G6M-30、土壤涅夫斯基菌GR15-1、陆地涅夫斯基菌KIS13-15和水生涅夫斯基菌F2-63形成了一个独特的聚类群,自展重抽样值为100%。在这些涅夫斯基菌菌株中,该新分离菌株与拉莫萨涅夫斯基菌Soe1(98.7%)和珀尔塞福涅涅夫斯基菌G6M-30(97.2%)显示出高序列相似性,与其他模式菌株的相似性值低于96.5%。观察到该新分离菌株在R2A培养基上于0 - 1.5%(w/v)NaCl(最适0%)、pH 7.0 - 9.0(最适pH 7.0)和温度15 - 36 °C(最适20 - 30 °C)条件下好氧生长。Seoho-38菌株与涅夫斯基菌属参考物种的模式菌株之间的DNA - DNA相关性值<24%。基因组DNA G + C含量测定为67.4 mol%。已鉴定出泛醌 - 8(Q - 8)(95%)和泛醌 - 7(Q - 7)(5%)为呼吸醌。细胞极性脂质被鉴定为双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、一种磷酸氨基脂质、两种糖脂、一种氨基脂质和四种未鉴定的脂质。主要脂肪酸成分包括总和特征3(Cω7c和/或Cω6c)、总和特征8(Cω7c和/或Cω6c)、C和C。基于上述多相证据,Seoho-38菌株(= KCTC 52221 = JCM 31888)代表涅夫斯基菌属的一个新物种,为此提出新名称涅夫斯基湖生菌(Nevskia lacus sp. nov.)。