Ferreira Marisa R, Dantas Joana M, Salgueiro Carlos A
UCIBIO-Requimte Departamento de Química Faculdade de Ciências e Tecnologia Universidade NOVA de Lisboa Caparica Portugal.
FEBS Open Bio. 2018 Nov 8;8(12):1897-1910. doi: 10.1002/2211-5463.12505. eCollection 2018 Dec.
Electrogenic bacteria, such as , can couple the oxidation of carbon sources to the reduction of extracellular electron acceptors; such acceptors include toxic and radioactive metals, as well as electrode surfaces, making a suitable candidate for applied use in bioremediation and bioenergy generation. is more promising in this regard than the better studied , as it has more efficient Fe (III) reduction rates and can convert nitrate to ammonia. The operon responsible for nitrate reductase activity in includes the gene encoding the cytochrome PpcF, which was proposed to exchange electrons with nitrate reductase. In the present work, we perform a biochemical and a biophysical characterization of PpcF. Spectroscopic techniques, including circular dichroism (CD), UV-visible, and nuclear magnetic resonance (NMR), revealed that the cytochrome is very stable ( > 85 °C), contains three low-spin hemes, and is diamagnetic ( = 0) and paramagnetic ( = 1/2) in the reduced and oxidized states, respectively. The NMR chemical shifts of the heme substituents were assigned and used to determine the heme core architecture of PpcF. Compared to the PpcA-family from , the spatial disposition of the hemes is conserved, but the functional properties are clearly distinct. In fact, potentiometric titrations monitored by UV-visible absorption reveal that the reduction potential values of PpcF are significantly less negative (-56 and -64 mV, the normal hydrogen electrode at pH 7.0 and 8.0, respectively). NMR redox titrations showed that the order of oxidation of the hemes is IV-I-III, a feature not observed for . The different redox properties displayed by PpcF, including the small redox-Bohr effect and low reduction potential value of heme IV, were structurally rationalized and attributed to the lower number of positively charged residues located in the vicinity of heme IV. Overall, the redox features of PpcF suggest that biotechnological applications of may require less negative working functional redox windows than those using by .
产电细菌,如 ,能将碳源的氧化与细胞外电子受体的还原偶联起来;这类受体包括有毒和放射性金属以及电极表面,这使得 成为生物修复和生物能源生产应用的合适候选者。在这方面, 比研究更深入的 更具前景,因为它具有更高的铁(III)还原速率,并且能将硝酸盐转化为氨。负责 中硝酸盐还原酶活性的操纵子包括编码细胞色素PpcF的基因,有人提出该基因可与硝酸盐还原酶交换电子。在本工作中,我们对PpcF进行了生化和生物物理表征。包括圆二色性(CD)、紫外可见光谱和核磁共振(NMR)在内的光谱技术表明,该细胞色素非常稳定(>85°C),含有三个低自旋血红素,在还原态和氧化态时分别为抗磁性( = 0)和顺磁性( = 1/2)。确定了血红素取代基的NMR化学位移,并用于确定PpcF的血红素核心结构。与来自 的PpcA家族相比,血红素的空间布局是保守的,但功能特性明显不同。事实上,通过紫外可见吸收监测的电位滴定表明,PpcF的还原电位值明显不那么负(在pH 7.0和8.0时分别为-56和-64 mV,相对于标准氢电极)。NMR氧化还原滴定表明,血红素的氧化顺序为IV-I-III,这是 在 中未观察到的特征。PpcF表现出的不同氧化还原特性,包括较小的氧化还原玻尔效应和血红素IV的低还原电位值,在结构上得到了合理的解释,并归因于位于血红素IV附近的带正电残基数量较少。总体而言,PpcF的氧化还原特征表明, 的生物技术应用可能比 使用的生物技术应用需要更不那么负的工作功能氧化还原窗口。