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从孙德尔本斯红树林生态系统土壤沉积物中分离出的具有生物活性的链霉菌菌株SMS_SU21的基因组序列草图

Draft Genome Sequence of Bioactive Strain Streptomyces sp. SMS_SU21, Isolated from Soil Sediment of the Sundarbans Mangrove Ecosystem.

作者信息

Sengupta Sohan, Pramanik Arnab, Basak Pijush, Bhattacharyya Maitree

机构信息

Jagadis Bose National Science Talent Search, Kolkata, West Bengal, India.

Jagadis Bose National Science Talent Search, Kolkata, West Bengal, India

出版信息

Genome Announc. 2018 Jul 5;6(27):e00614-18. doi: 10.1128/genomeA.00614-18.

DOI:10.1128/genomeA.00614-18
PMID:29976609
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6033983/
Abstract

sp. SMS_SU21 possesses strong antimicrobial activity and antioxidant potential. This strain was isolated from the Sundarbans mangrove ecosystem, and its draft genome comprises 7,449,420 bp with 6,680 open reading frames. Genome analysis of strain SMS_SU21 provides insight into its secondary metabolite arsenal and reveals the gene clusters putatively responsible for its bioactive potential.

摘要

菌株SMS_SU21具有强大的抗菌活性和抗氧化潜力。该菌株从孙德尔本斯红树林生态系统中分离得到，其基因组草图包含7,449,420个碱基对，有6,680个开放阅读框。对菌株SMS_SU21的基因组分析有助于了解其次生代谢产物库，并揭示了可能与其生物活性潜力相关的基因簇。

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本文引用的文献

1
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.antiSMASH 4.0——化学预测和基因簇边界识别的改进。
Nucleic Acids Res. 2017 Jul 3;45(W1):W36-W41. doi: 10.1093/nar/gkx319.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
Antimicrobial activities of actinomycetes isolated from unexplored regions of Sundarbans mangrove ecosystem.从孙德尔本斯红树林生态系统未开发区域分离出的放线菌的抗菌活性。
BMC Microbiol. 2015 Aug 21;15:170. doi: 10.1186/s12866-015-0495-4.
4
Spatiotemporal analysis of bacterial diversity in sediments of Sundarbans using parallel 16S rRNA gene tag sequencing.利用平行16S rRNA基因标签测序对孙德尔本斯沉积物中细菌多样性进行时空分析。
Microb Ecol. 2015 Apr;69(3):500-11. doi: 10.1007/s00248-014-0498-y. Epub 2014 Sep 26.
5
Informed and automated k-mer size selection for genome assembly.基于信息和自动化的基因组组装的 k-mer 大小选择。
Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.
6
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
Using the Velvet de novo assembler for short-read sequencing technologies.将Velvet从头组装程序用于短读长测序技术。
Curr Protoc Bioinformatics. 2010 Sep;Chapter 11:Unit 11.5. doi: 10.1002/0471250953.bi1105s31.
9
Streptomyces avicenniae sp. nov., a novel actinomycete isolated from the rhizosphere of the mangrove plant Avicennia mariana.阿维森纳链霉菌新种，一种从红树植物滨海白骨壤根际分离出的新型放线菌。
Int J Syst Evol Microbiol. 2009 Oct;59(Pt 10):2624-8. doi: 10.1099/ijs.0.009357-0. Epub 2009 Jul 22.
10
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.