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葡萄牙医院产碳青霉烯酶菌株的分子流行病学及危险因素:欧洲产碳青霉烯酶调查(EuSCAPE)结果

Molecular Epidemiology and Risk Factors of Carbapenemase-Producing Isolates in Portuguese Hospitals: Results From European Survey on Carbapenemase-Producing (EuSCAPE).

作者信息

Manageiro Vera, Romão Raquel, Moura Inês Barata, Sampaio Daniel A, Vieira Luís, Ferreira Eugénia, Caniça Manuela

机构信息

National Reference Laboratory of Antibiotic Resistances and Healthcare Associated Infections, Department of Infectious Diseases, National Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal.

Centre for the Studies of Animal Science, Institute of Agrarian and Agri-Food Sciences and Technologies, University of Oporto, Oporto, Portugal.

出版信息

Front Microbiol. 2018 Nov 27;9:2834. doi: 10.3389/fmicb.2018.02834. eCollection 2018.

Abstract

In Portugal, the epidemiological stage for the spread of carbapenemase-producing (CPE) increased from sporadic isolates or single hospital clones (2010-2013), to hospital outbreaks, later. Here we report data from a 6-month study performed under the European Survey on Carbapenemase-Producing (EuSCAPE). During the study period, 67 isolates (61 and 6 ) non-susceptible to carbapenems were identified in participant hospital laboratories. We detected 37 (including one new variant: ), 1 , and 1 plus , alone or in combination with other genes. Bioinformatics analysis of the KPC-21-producing identified the new variant in a 12,748 bp length plasmid. The gene was harbored on a non-Tn element, presenting upstream a partial IS (ΔISΔ) with the related left IR (IR) and downstream a truncated Tn3 transposon. PFGE and MLST analysis showed an important diversity, as isolates belonged to distinct PFGE and STs profiles. In this study, we highlighted the presence of the high-risk clone sequence-type (ST) 131 clade C/H30. This worldwide disseminated lineage was already detected in Portugal among other antibiotic resistance reservoirs. This study highlights the intra- and inter-hospital spread and possible intercontinental circulation of CPE isolates.

摘要

在葡萄牙,产碳青霉烯酶肠杆菌科细菌(CPE)的传播流行阶段从偶发分离株或单一医院克隆株(2010 - 2013年),发展到后来的医院暴发。在此,我们报告在欧洲产碳青霉烯酶肠杆菌科细菌调查(EuSCAPE)下进行的一项为期6个月研究的数据。在研究期间,参与研究的医院实验室共鉴定出67株对碳青霉烯类不敏感的分离株(61株 和6株 )。我们检测到37株 (包括一个新变体: )、1株 以及1株 加 ,单独或与其他 基因组合存在。对产KPC - 21的 进行的生物信息学分析在一个长度为12,748 bp的质粒中鉴定出了新变体 。 基因位于一个非转座子元件上,其上游有一个带有相关左末端反向重复序列(IR)的部分插入序列(ΔISΔ),下游有一个截短的Tn3转座子。脉冲场凝胶电泳(PFGE)和多位点序列分型(MLST)分析显示出重要的多样性,因为分离株属于不同的PFGE和STs谱型。在本研究中,我们强调了高风险克隆序列型(ST)131进化枝C/H30的存在。这个在全球传播的 谱系在葡萄牙的其他抗生素耐药菌库中已经被检测到。本研究突出了CPE分离株在医院内和医院间的传播以及可能的洲际传播情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/411c/6277554/c77064a1fb13/fmicb-09-02834-g001.jpg

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