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TbRGG2 蛋白的 RRM 通过多个表面结合并重塑 RNA。

The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.

机构信息

Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA.

Department of Chemistry, Duke University School of Medicine, Durham, NC 27710, USA.

出版信息

Nucleic Acids Res. 2019 Feb 28;47(4):2130-2142. doi: 10.1093/nar/gky1259.

Abstract

Kinetoplastid RNA (kRNA) editing takes place in the mitochondria of kinetoplastid protists and creates translatable mRNAs by uridine insertion/deletion. Extensively edited (pan-edited) transcripts contain quadruplex forming guanine stretches, which must be remodeled to promote uridine insertion/deletion. Here we show that the RRM domain of the essential kRNA-editing factor TbRGG2 binds poly(G) and poly(U) RNA and can unfold both. A region C-terminal to the RRM mediates TbRGG2 dimerization, enhancing RNA binding. A RRM-U4 RNA structure reveals a unique RNA-binding mechanism in which the two RRMs of the dimer employ aromatic residues outside the canonical RRM RNA-binding motifs to encase and wrench open the RNA, while backbone atoms specify the uridine bases. Notably, poly(G) RNA is bound via a different binding surface. Thus, these data indicate that TbRGG2 RRM can bind and remodel several RNA substrates suggesting how it might play multiple roles in the kRNA editing process.

摘要

动基体 RNA(kRNA)编辑发生在动基体原生生物的线粒体中,通过尿嘧啶的插入/缺失来创建可翻译的 mRNA。经过广泛编辑(全编辑)的转录本包含形成四联体的鸟嘌呤延伸,这些延伸必须进行重塑以促进尿嘧啶的插入/缺失。在这里,我们表明,必需的 kRNA 编辑因子 TbRGG2 的 RRM 结构域结合聚(G)和聚(U)RNA,并可以展开这两种 RNA。RRM 结构域 C 端的一个区域介导 TbRGG2 二聚化,增强 RNA 结合。RRM-U4 RNA 结构揭示了一种独特的 RNA 结合机制,其中二聚体的两个 RRM 使用经典 RRM RNA 结合基序之外的芳香族残基来包围和扭曲 RNA,而骨架原子指定尿嘧啶碱基。值得注意的是,聚(G)RNA 通过不同的结合表面结合。因此,这些数据表明,TbRGG2 RRM 可以结合和重塑几种 RNA 底物,这表明它可能在 kRNA 编辑过程中发挥多种作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47da/6393287/83c7d20c37c6/gky1259fig1.jpg

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