J Am Chem Soc. 2019 Feb 6;141(5):2080-2086. doi: 10.1021/jacs.8b11448. Epub 2019 Jan 22.
The interactions of a protein, its phase behavior, and, ultimately, its ability to function are all influenced by the interactions between the protein and its hydration waters. Here, we study proteins with a variety of sizes, shapes, chemistries, and biological functions and characterize their interactions with their hydration waters using molecular simulations and enhanced sampling techniques. We find that, akin to extended hydrophobic surfaces, proteins situate their hydration waters at the edge of a dewetting transition, making them susceptible to unfavorable perturbations. We also find that the strength of the unfavorable potential needed to trigger dewetting is roughly the same for all proteins studied here and depends primarily on the width of the hydration shell being perturbed. Our findings establish a framework for systematically classifying protein patches according to how favorably they interact with water.
蛋白质的相互作用、相行为,最终是其发挥功能的能力,都受到蛋白质与其水合水之间相互作用的影响。在这里,我们研究了具有各种大小、形状、化学性质和生物学功能的蛋白质,并使用分子模拟和增强采样技术来表征它们与水合水的相互作用。我们发现,类似于扩展的疏水表面,蛋白质将其水合水定位在去湿转变的边缘,使它们容易受到不利的干扰。我们还发现,引发去湿所需的不利势的强度对于这里研究的所有蛋白质大致相同,主要取决于被干扰的水合壳的宽度。我们的发现为系统地根据蛋白质与水相互作用的有利程度对蛋白质斑块进行分类奠定了框架。