• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

从多年冻土融化梯度中分离得到的成团泛菌TH81的全基因组序列

Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient.

作者信息

Humphrey Jennie, Seitz Taylor, Haan Tracie, Ducluzeau Anne-Lise, Drown Devin M

机构信息

Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA.

Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska, USA.

出版信息

Microbiol Resour Announc. 2019 Jan 3;8(1). doi: 10.1128/MRA.01486-18. eCollection 2019 Jan.

DOI:10.1128/MRA.01486-18
PMID:30637402
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6318373/
Abstract

In this report, we describe the complete genome assembly of a Pantoea agglomerans isolate, TH81, collected from a boreal forest soil associated with permafrost thaw. Using both Nanopore and Illumina sequences, we assembled four circular contigs totaling 4,983,504 bp ( , 4,127,869 bp), a complete chromosome with three plasmids.

摘要

在本报告中,我们描述了从与永久冻土融化相关的北方森林土壤中分离出的成团泛菌菌株TH81的全基因组组装情况。利用纳米孔测序和Illumina测序技术,我们组装出了4条环状重叠群,总计4,983,504 bp( ,4,127,869 bp),即一条完整的染色体和三个质粒。

相似文献

1
Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient.从多年冻土融化梯度中分离得到的成团泛菌TH81的全基因组序列
Microbiol Resour Announc. 2019 Jan 3;8(1). doi: 10.1128/MRA.01486-18. eCollection 2019 Jan.
2
Complete Genome Sequence of Bacillus mycoides TH26, Isolated from a Permafrost Thaw Gradient.从多年冻土融化梯度中分离出的蕈状芽孢杆菌TH26的全基因组序列
Microbiol Resour Announc. 2019 Jun 13;8(24):e00507-19. doi: 10.1128/MRA.00507-19.
3
Complete Genome Sequence of CHTF15, a Walnut Pathogen.核桃病原 CHTF15 的全基因组序列
Mol Plant Microbe Interact. 2023 Feb;36(2):134-137. doi: 10.1094/MPMI-10-22-0216-A. Epub 2023 Jan 24.
4
Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pantoea agglomerans Strain UAEU18, Isolated from Date Palm Rhizosphere Soil in the United Arab Emirates.从阿联酋枣椰树根际土壤中分离出的植物促生细菌聚团泛菌菌株UAEU18的全基因组序列
Microbiol Resour Announc. 2020 Apr 23;9(17):e00174-20. doi: 10.1128/MRA.00174-20.
5
Complete Genome Sequence of subsp. ZJ-FGZX1, a Lucky Bamboo Pathogen.subsp. ZJ-FGZX1 的全基因组序列,一种富贵竹病原菌。
Mol Plant Microbe Interact. 2020 Nov;33(11):1274-1276. doi: 10.1094/MPMI-05-20-0111-A. Epub 2020 Sep 24.
6
Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites.与白蚁相关的成团泛菌和类产碱泛菌分离株的基因组序列草图
Stand Genomic Sci. 2016 Mar 1;11:23. doi: 10.1186/s40793-016-0144-z. eCollection 2016.
7
Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing.利用Illumina和PacBio测序技术获得的成团泛菌ASB05全基因组序列
Microbiol Resour Announc. 2021 Jul 29;10(30):e0050121. doi: 10.1128/MRA.00501-21.
8
Comparative sequence analysis of pPATH pathogenicity plasmids in gall-forming bacteria.致瘤细菌中pPATH致病性质粒的比较序列分析
Front Plant Sci. 2023 Jul 31;14:1198160. doi: 10.3389/fpls.2023.1198160. eCollection 2023.
9
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen.综合基因组分析揭示出聚集泛菌 KM1 的毒力因子和抗生素耐药基因,该菌是一种潜在的机会性病原体。
PLoS One. 2021 Jan 6;16(1):e0239792. doi: 10.1371/journal.pone.0239792. eCollection 2021.
10
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska.阿拉斯加多年冻土解冻梯度上的冻原细菌和古菌群落的变化。
Mol Ecol. 2015 Jan;24(1):222-34. doi: 10.1111/mec.13015. Epub 2014 Dec 31.

引用本文的文献

1
Interaction of bacteriophage P1 with an epiphytic strain-the role of the interplay between various mobilome elements.噬菌体P1与一种附生菌株的相互作用——各种可移动基因组元件之间相互作用的作用
Front Microbiol. 2024 Mar 25;15:1356206. doi: 10.3389/fmicb.2024.1356206. eCollection 2024.
2
Hybrid Genome Assembly for Predicting Functional Potential of a Novel Strain as Plant Biomass Valorisation Agent.用于预测新型菌株作为植物生物质增值剂功能潜力的混合基因组组装
Indian J Microbiol. 2021 Sep;61(3):283-290. doi: 10.1007/s12088-021-00935-5. Epub 2021 Apr 22.
3
Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts.土壤扰动通过土壤微生物群落变化影响植物生产力。
Front Microbiol. 2021 Feb 1;12:619711. doi: 10.3389/fmicb.2021.619711. eCollection 2021.
4
Unearthing Antibiotic Resistance Associated with Disturbance-Induced Permafrost Thaw in Interior Alaska.揭示阿拉斯加内陆干扰引起的永久冻土融化相关的抗生素耐药性
Microorganisms. 2021 Jan 6;9(1):116. doi: 10.3390/microorganisms9010116.
5
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen.综合基因组分析揭示出聚集泛菌 KM1 的毒力因子和抗生素耐药基因,该菌是一种潜在的机会性病原体。
PLoS One. 2021 Jan 6;16(1):e0239792. doi: 10.1371/journal.pone.0239792. eCollection 2021.

本文引用的文献

1
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
2
Fast and accurate de novo genome assembly from long uncorrected reads.从长的未校正读段中进行快速且准确的从头基因组组装。
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
3
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon:一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
4
Prokka: rapid prokaryotic genome annotation.Prokka:快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
5
A greedy algorithm for aligning DNA sequences.一种用于比对DNA序列的贪婪算法。
J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478.