Giermasińska-Buczek Katarzyna, Gawor Jan, Stefańczyk Emil, Gągała Urszula, Żuchniewicz Karolina, Rekosz-Burlaga Hanna, Gromadka Robert, Łobocka Małgorzata
Department of Biochemistry and Microbiology, Institute of Biology, Warsaw University of Life Sciences (SGGW-WULS), Warsaw, Poland.
Institute of Biochemistry and Biophysics of the Polish Academy of Sciences, Warsaw, Poland.
Front Microbiol. 2024 Mar 25;15:1356206. doi: 10.3389/fmicb.2024.1356206. eCollection 2024.
P1 is a model, temperate bacteriophage of the 94 kb genome. It can lysogenize representatives of the order. In lysogens, it is maintained as a plasmid. We tested P1 interactions with the biocontrol L15 strain to explore the utility of P1 in genome engineering. A P1 derivative carrying the Tn (cm) transposon could transfer a plasmid from to the L15 cells. The L15 cells infected with this derivative formed chloramphenicol-resistant colonies. They could grow in a liquid medium with chloramphenicol after adaptation and did not contain prophage P1 but the chromosomally inserted cm marker of P1 Tn (). The insertions were accompanied by various rearrangements upstream of the Tn gene promoter and the loss of IS (ISL) from the corresponding region. Sequence analysis of the L15 strain genome revealed a chromosome and three plasmids of 0.58, 0.18, and 0.07 Mb. The largest and the smallest plasmid appeared to encode partition and replication incompatibility determinants similar to those of prophage P1, respectively. In the L15 derivatives cured of the largest plasmid, P1 with Tn could not replace the smallest plasmid even if selected. However, it could replace the smallest and the largest plasmid of L15 if its Tn ISL sequence driving the Tn mobility was inactivated or if it was enriched with an immobile kanamycin resistance marker. Moreover, it could develop lytically in the L15 derivatives cured of both these plasmids. Clearly, under conditions of selection for P1, the mobility of the P1 selective marker determines whether or not the incoming P1 can outcompete the incompatible L15 resident plasmids. Our results demonstrate that can serve as a host for bacteriophage P1 and can be engineered with the help of this phage. They also provide an example of how antibiotics can modify the outcome of horizontal gene transfer in natural environments. Numerous plasmids of strains appear to contain determinants of replication or partition incompatibility with P1. Therefore, P1 with an immobile selective marker may be a tool of choice in curing these strains from the respective plasmids to facilitate their functional analysis.
P1是一种具有94 kb基因组的温和噬菌体模型。它可以使该菌属的代表菌株发生溶原化。在溶原菌中,它以质粒形式维持。我们测试了P1与生物防治L15菌株的相互作用,以探索P1在基因组工程中的效用。携带转座子Tn(cm)的P1衍生物可以将一个质粒从……转移到L15细胞中。感染了这种衍生物的L15细胞形成了氯霉素抗性菌落。经过适应后,它们可以在含有氯霉素的液体培养基中生长,并且不含原噬菌体P1,但含有P1 Tn(……)的染色体插入cm标记。这些插入伴随着Tn基因启动子上游的各种重排以及相应区域中IS(ISL)的缺失。L15菌株基因组的序列分析揭示了一条染色体以及三个大小分别为0.58 Mb、0.18 Mb和0.07 Mb的质粒。最大和最小的质粒似乎分别编码与原噬菌体P1相似的分配和复制不相容决定簇。在去除了最大质粒的L15衍生物中,带有Tn的P1即使经过选择也无法取代最小的质粒。然而,如果其驱动Tn移动性的Tn ISL序列失活,或者富含一个不可移动的卡那霉素抗性标记,它就可以取代L15的最小和最大质粒。此外,它可以在去除了这两种质粒的L15衍生物中进行裂解生长。显然,在对P1进行选择的条件下,P1选择标记的移动性决定了进入的P1是否能够胜过不相容的L15常驻质粒。我们的结果表明,……可以作为噬菌体P1的宿主,并可以借助这种噬菌体进行工程改造。它们还提供了一个抗生素如何改变自然环境中水平基因转移结果的例子。……菌株的许多质粒似乎都含有与P1复制或分配不相容的决定簇。因此,带有不可移动选择标记的P1可能是从相应质粒中清除这些菌株以促进其功能分析的首选工具。