Palmer Arthur G, Koss Hans
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, United States.
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, United States.
Methods Enzymol. 2019;615:177-236. doi: 10.1016/bs.mie.2018.09.028. Epub 2018 Dec 4.
The phenomenon of chemical or conformational exchange in NMR spectroscopy has enabled detailed characterization of time-dependent aspects of biomolecular function, including folding, molecular recognition, allostery, and catalysis, on timescales from microsecond to second. Importantly, NMR methods based on a variety of spin relaxation parameters have been developed that provide quantitative information on interconversion kinetics, thermodynamic properties, and structural features of molecular states populated to a fraction of a percent at equilibrium and otherwise unobservable by other NMR approaches. The ongoing development of more sophisticated experimental techniques and the necessity to apply these methods to larger and more complex molecular systems engenders a corresponding need for theoretical advances describing such techniques and facilitating data analysis in applications. This review surveys current aspects of the theory of chemical exchange, as utilized in ZZ-exchange; Hahn and Carr-Purcell-Meiboom-Gill (CPMG) spin-echo; and R, chemical exchange saturation transfer (CEST), and dark state saturation transfer (DEST) spin-locking experiments. The review emphasizes theoretical results for kinetic topologies with more than two interconverting states, both to obtain compact analytical forms suitable for data analysis and to establish conditions for distinguishability between alternative kinetic schemes.
核磁共振波谱中的化学或构象交换现象,已能够在微秒到秒的时间尺度上,对生物分子功能的时间依赖性方面进行详细表征,包括折叠、分子识别、别构作用和催化作用。重要的是,基于各种自旋弛豫参数的核磁共振方法已经得到开发,这些方法能提供关于互变动力学、热力学性质以及平衡时占比仅百分之几且其他核磁共振方法无法观测到的分子态结构特征的定量信息。更复杂实验技术的不断发展以及将这些方法应用于更大、更复杂分子系统的必要性,相应地需要在理论上取得进展,以描述此类技术并促进应用中的数据分析。本综述考察了化学交换理论在ZZ交换、哈恩和 Carr-Purcell-Meiboom-Gill(CPMG)自旋回波以及R、化学交换饱和转移(CEST)和暗态饱和转移(DEST)自旋锁定实验中的当前应用情况。该综述强调了具有两个以上互变状态的动力学拓扑的理论结果,既为了获得适合数据分析的紧凑解析形式,也为了确定区分替代动力学方案的条件。