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胶体渗透参数化及其亚细胞拥挤度的测量。

Colloid osmotic parameterization and measurement of subcellular crowding.

机构信息

Marine Biological Laboratory, Woods Hole, MA 02543.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115.

出版信息

Mol Biol Cell. 2019 Jan 15;30(2):173-180. doi: 10.1091/mbc.E18-09-0549.

DOI:10.1091/mbc.E18-09-0549
PMID:30640588
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6589563/
Abstract

Crowding of the subcellular environment by macromolecules is thought to promote protein aggregation and phase separation. A challenge is how to parameterize the degree of crowding of the cell interior or artificial solutions that is relevant to these reactions. Here I review colloid osmotic pressure as a crowding metric. This pressure is generated by solutions of macromolecules in contact with pores that are permeable to water and ions but not macromolecules. It generates depletion forces that push macromolecules together in crowded solutions and thus promotes aggregation and phase separation. I discuss measurements of colloid osmotic pressure inside cells using the nucleus, the cytoplasmic gel, and fluorescence resonant energy transfer (FRET) biosensors as osmometers, which return a range of values from 1 to 20 kPa. I argue for a low value, 1-2 kPa, in frog eggs and perhaps more generally. This value is close to the linear range on concentration-pressure curves and is thus not crowded from an osmotic perspective. I discuss the implications of a low crowding pressure inside cells for phase separation biology, buffer design, and proteome evolution. I also discuss a pressure-tension model for nuclear shape, where colloid osmotic pressure generated by nuclear protein import inflates the nucleus.

摘要

细胞内环境被大分子拥挤被认为会促进蛋白质聚集和相分离。一个挑战是如何参数化与这些反应相关的细胞内部或人工溶液的拥挤程度。在这里,我回顾胶体渗透压作为一种拥挤度指标。这种压力是由大分子溶液在与水和离子可渗透但大分子不可渗透的孔接触时产生的。它产生耗尽力,将大分子在拥挤的溶液中推在一起,从而促进聚集和相分离。我讨论了使用核、细胞质凝胶和荧光共振能量转移(FRET)生物传感器作为渗透压计测量细胞内胶体渗透压的方法,这些方法返回的数值范围为 1 到 20 kPa。我认为在青蛙卵中,以及可能更普遍的情况下,值较低,为 1-2 kPa。该值接近浓度-压力曲线的线性范围,因此从渗透压的角度来看并不拥挤。我讨论了细胞内低拥挤压力对相分离生物学、缓冲设计和蛋白质组进化的影响。我还讨论了核形状的压力-张力模型,其中核蛋白输入产生的胶体渗透压使核膨胀。

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Cell. 2018 Jul 26;174(3):688-699.e16. doi: 10.1016/j.cell.2018.06.006. Epub 2018 Jun 28.
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A User's Guide for Phase Separation Assays with Purified Proteins.用纯化蛋白进行相分离分析的用户指南。
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mTORC1 Controls Phase Separation and the Biophysical Properties of the Cytoplasm by Tuning Crowding.
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A unified-field theory of genome organization and gene regulation.基因组组织与基因调控的统一场理论。
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Protein nanoparticles induce the activation of voltage-dependent non-selective ion channels to modulate biological osmotic pressure in cytotoxic cerebral edema.蛋白质纳米颗粒可诱导电压依赖性非选择性离子通道激活,以调节细胞毒性脑水肿中的生物渗透压。
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