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建模骨转移患者的癌症结局:通过联合模型将生存数据与 I 型胶原 N-端肽(NTX)动力学相结合。

Modelling cancer outcomes of bone metastatic patients: combining survival data with N-Telopeptide of type I collagen (NTX) dynamics through joint models.

机构信息

INESC-ID, Instituto Superior Técnico, Universidade de Lisboa, Rua Alves Redol, 9, Lisboa, 1000-029, Portugal.

IDMEC, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal.

出版信息

BMC Med Inform Decis Mak. 2019 Jan 17;19(1):13. doi: 10.1186/s12911-018-0728-1.

Abstract

BACKGROUND

Joint models (JM) have emerged as a promising statistical framework to concurrently analyse survival data and multiple longitudinal responses. This is particularly relevant in clinical studies where the goal is to estimate the association between time-to-event data and the biomarkers evolution. In the context of oncological data, JM can indeed provide interesting prognostic markers for the event under study and thus support clinical decisions and treatment choices. However, several problems arise when dealing with this type of data, such as the high-dimensionality of the covariates space, the lack of knowledge about the function structure of the time series and the presence of missing data, facts that may hamper the accurate estimation of the JM.

METHODS

We propose to apply JM for the analysis of bone metastatic patients and infer the association of their survival with several covariates, in particular the N-Telopeptide of Type I Collagen (NTX) dynamics. This biomarker has been identified as a relevant prognostic factor in patients with metastatic cancer, but only using static information in some specific time points.

RESULTS

We extended this analysis using the full NTX time series for a larger cohort of patients with bone metastasis, and compared the results obtained by the JM and the extended Cox regression model. Imputation based on fuzzy clustering was used to deal with missing values and several functions for NTX evolution were compared, such as rational, exponential and cubic splines.

CONCLUSIONS

The JM obtained confirm the association between NTX values and patients' response, attesting the importance of this time series, and additionally provide a deep understanding of the key survival covariates.

摘要

背景

联合模型 (JM) 已成为一种很有前途的统计框架,可以同时分析生存数据和多个纵向响应。这在临床研究中尤为相关,研究目的是估计时间事件数据与生物标志物演变之间的关联。在肿瘤学数据的背景下,JM 确实可以为研究中的事件提供有趣的预后标志物,从而支持临床决策和治疗选择。然而,在处理这类数据时会出现几个问题,例如协变量空间的高维性、对时间序列函数结构的了解不足以及存在缺失数据,这些事实可能会阻碍 JM 的准确估计。

方法

我们提出应用 JM 分析骨转移患者,并推断他们的生存与多个协变量的关联,特别是 I 型胶原 N-端肽 (NTX) 动力学。这种生物标志物已被确定为转移性癌症患者的一个相关预后因素,但仅在某些特定时间点使用静态信息。

结果

我们使用更大的骨转移患者队列扩展了对 NTX 全时间序列的分析,并比较了 JM 和扩展的 Cox 回归模型获得的结果。使用基于模糊聚类的插补处理缺失值,并比较了 NTX 演化的几种函数,例如有理、指数和三次样条。

结论

获得的 JM 证实了 NTX 值与患者反应之间的关联,证明了这个时间序列的重要性,并且还提供了对关键生存协变量的深入理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/117d/6337820/131d9d5cb334/12911_2018_728_Fig1_HTML.jpg

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