Seyednasrollah Fatemeh, Koestler Devin C, Wang Tao, Piccolo Stephen R, Vega Roberto, Greiner Russell, Fuchs Christiane, Gofer Eyal, Kumar Luke, Wolfinger Russell D, Kanigel Winner Kimberly, Bare Chris, Neto Elias Chaibub, Yu Thomas, Shen Liji, Abdallah Kald, Norman Thea, Stolovitzky Gustavo, Soule Howard R, Sweeney Christopher J, Ryan Charles J, Scher Howard I, Sartor Oliver, Elo Laura L, Zhou Fang Liz, Guinney Justin, Costello James C
Fatemeh Seyednasrollah and Laura L. Elo, Turku Centre for Biotechnology; University of Turku; Åbo Akademi University, Turku, Finland; Devin C. Koestler, University of Kansas Medical Center, Kansas City, KS; Tao Wang, University of Texas Southwestern Medical Center, Dallas, TX; Stephen R. Piccolo, Brigham Young University, Provo; University of Utah, Salt Lake City, Utah, UT; Roberto Vega, Russell Greiner, and Luke Kumar, University of Alberta; Alberta Innovates Centre for Machine Learning, Edmonton, Alberta, Canada; Christiane Fuchs, Helmholtz Zentrum München, Neuherberg; Technische Universität München, Garching, Germany; Eyal Gofer, The Hebrew University, Jerusalem, Israel; Russell D. Wolfinger, SAS Institute, Cary, NC; Kimberly Kanigel Winner and James C. Costello, University of Colorado, Anschutz Medical Campus, Aurora, CO; Chris Bare, Elias Chaibub Neto, Thomas Yu, Thea Norman, and Justin Guinney, Sage Bionetworks, Seattle, WA; Liji Shen and Fang Liz Zhou, Sanofi, Bridgewater, NJ; Kald Abdallah, AstraZeneca, Gaithersburg, MD; Gustavo Stolovitzky, IBM Research, Yorktown Heights; Howard I. Scher, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY; Howard R. Soule, Prostate Cancer Foundation, Santa Monica; Charles J. Ryan, University of California, San Francisco, CA; Christopher J. Sweeney, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA; and Oliver Sartor, Tulane University, New Orleans, LA.
JCO Clin Cancer Inform. 2017 Nov;1:1-15. doi: 10.1200/CCI.17.00018.
Docetaxel has a demonstrated survival benefit for patients with metastatic castration-resistant prostate cancer (mCRPC); however, 10% to 20% of patients discontinue docetaxel prematurely because of toxicity-induced adverse events, and the management of risk factors for toxicity remains a challenge.
The comparator arms of four phase III clinical trials in first-line mCRPC were collected, annotated, and compiled, with a total of 2,070 patients. Early discontinuation was defined as treatment stoppage within 3 months as a result of adverse treatment effects; 10% of patients discontinued treatment. We designed an open-data, crowd-sourced DREAM Challenge for developing models with which to predict early discontinuation of docetaxel treatment. Clinical features for all four trials and outcomes for three of the four trials were made publicly available, with the outcomes of the fourth trial held back for unbiased model evaluation. Challenge participants from around the world trained models and submitted their predictions. Area under the precision-recall curve was the primary metric used for performance assessment.
In total, 34 separate teams submitted predictions. Seven models with statistically similar area under precision-recall curves (Bayes factor ≤ 3) outperformed all other models. A postchallenge analysis of risk prediction using these seven models revealed three patient subgroups: high risk, low risk, or discordant risk. Early discontinuation events were two times higher in the high-risk subgroup compared with the low-risk subgroup. Simulation studies demonstrated that use of patient discontinuation prediction models could reduce patient enrollment in clinical trials without the loss of statistical power.
This work represents a successful collaboration between 34 international teams that leveraged open clinical trial data. Our results demonstrate that routinely collected clinical features can be used to identify patients with mCRPC who are likely to discontinue treatment because of adverse events and establishes a robust benchmark with implications for clinical trial design.
多西他赛已被证明对转移性去势抵抗性前列腺癌(mCRPC)患者有生存获益;然而,10%至20%的患者因毒性引起的不良事件而提前停用多西他赛,毒性危险因素的管理仍然是一项挑战。
收集、注释并汇总了四项一线mCRPC III期临床试验的对照臂,共有2070例患者。早期停药定义为因治疗不良反应在3个月内停止治疗;10%的患者停止治疗。我们设计了一个开放数据、众包的DREAM挑战,以开发预测多西他赛治疗早期停药的模型。公开了所有四项试验的临床特征以及四项试验中三项的结果,保留了第四项试验的结果用于无偏模型评估。来自世界各地的挑战参与者训练模型并提交他们的预测。精确召回曲线下面积是用于性能评估的主要指标。
总共34个独立团队提交了预测。七个精确召回曲线下面积在统计学上相似(贝叶斯因子≤3)的模型优于所有其他模型。使用这七个模型进行的风险预测挑战后分析揭示了三个患者亚组:高风险、低风险或不一致风险。高风险亚组的早期停药事件比低风险亚组高两倍。模拟研究表明,使用患者停药预测模型可以减少临床试验中的患者入组,而不会损失统计效力。
这项工作代表了34个国际团队之间利用开放临床试验数据的成功合作。我们的结果表明,常规收集的临床特征可用于识别可能因不良事件而停止治疗的mCRPC患者,并建立了一个对临床试验设计有影响的稳健基准。