• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

解析肺癌前病变的基因组、表观基因组和转录组图谱。

Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions.

机构信息

Lungs for Living Research Centre, UCL Respiratory, University College London, London, UK.

Research Department of Cancer Biology and Medical Genomics Laboratory, UCL Cancer Institute, University College London, London, UK.

出版信息

Nat Med. 2019 Mar;25(3):517-525. doi: 10.1038/s41591-018-0323-0. Epub 2019 Jan 21.

DOI:10.1038/s41591-018-0323-0
PMID:30664780
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7614970/
Abstract

The molecular alterations that occur in cells before cancer is manifest are largely uncharted. Lung carcinoma in situ (CIS) lesions are the pre-invasive precursor to squamous cell carcinoma. Although microscopically identical, their future is in equipoise, with half progressing to invasive cancer and half regressing or remaining static. The cellular basis of this clinical observation is unknown. Here, we profile the genomic, transcriptomic, and epigenomic landscape of CIS in a unique patient cohort with longitudinally monitored pre-invasive disease. Predictive modeling identifies which lesions will progress with remarkable accuracy. We identify progression-specific methylation changes on a background of widespread heterogeneity, alongside a strong chromosomal instability signature. We observed mutations and copy number changes characteristic of cancer and chart their emergence, offering a window into early carcinogenesis. We anticipate that this new understanding of cancer precursor biology will improve early detection, reduce overtreatment, and foster preventative therapies targeting early clonal events in lung cancer.

摘要

在癌症表现之前,细胞中发生的分子改变在很大程度上是未知的。肺癌原位(CIS)病变是鳞状细胞癌的侵袭前前体。尽管在显微镜下相同,但它们的未来处于平衡状态,一半进展为浸润性癌,一半消退或保持静止。这种临床观察的细胞学基础尚不清楚。在这里,我们对具有纵向监测的侵袭前疾病的独特患者队列中的 CIS 进行了基因组、转录组和表观基因组图谱分析。预测建模以惊人的准确性识别出哪些病变会进展。我们在广泛的异质性背景下发现了进展特异性的甲基化变化,以及强烈的染色体不稳定性特征。我们观察到了具有癌症特征的突变和拷贝数变化,并追踪了它们的出现,为早期癌变提供了一个窗口。我们预计,对癌症前体生物学的这种新认识将改善早期检测,减少过度治疗,并促进针对肺癌早期克隆事件的预防性治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/7dd57ac02132/EMS185036-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/40f909d740b0/EMS185036-f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/6913d9c650be/EMS185036-f007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/a0597279e253/EMS185036-f008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/760918c819ec/EMS185036-f009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/88459edbee54/EMS185036-f010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/6939ab15172e/EMS185036-f011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/a2d72924f291/EMS185036-f012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/ba99a23f65b4/EMS185036-f013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/1ee977cb0a1a/EMS185036-f014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/97da76b5afe5/EMS185036-f015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/5b436d95f0eb/EMS185036-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/47f15b344a0b/EMS185036-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/814c3d7772fc/EMS185036-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/3a432f78dfc0/EMS185036-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/7dd57ac02132/EMS185036-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/40f909d740b0/EMS185036-f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/6913d9c650be/EMS185036-f007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/a0597279e253/EMS185036-f008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/760918c819ec/EMS185036-f009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/88459edbee54/EMS185036-f010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/6939ab15172e/EMS185036-f011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/a2d72924f291/EMS185036-f012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/ba99a23f65b4/EMS185036-f013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/1ee977cb0a1a/EMS185036-f014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/97da76b5afe5/EMS185036-f015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/5b436d95f0eb/EMS185036-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/47f15b344a0b/EMS185036-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/814c3d7772fc/EMS185036-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/3a432f78dfc0/EMS185036-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9472/7614970/7dd57ac02132/EMS185036-f005.jpg

相似文献

1
Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions.解析肺癌前病变的基因组、表观基因组和转录组图谱。
Nat Med. 2019 Mar;25(3):517-525. doi: 10.1038/s41591-018-0323-0. Epub 2019 Jan 21.
2
DNA copy number alterations in endobronchial squamous metaplastic lesions predict lung cancer.支气管内鳞状上皮化生病变中的 DNA 拷贝数改变可预测肺癌。
Am J Respir Crit Care Med. 2011 Oct 15;184(8):948-56. doi: 10.1164/rccm.201102-0218OC. Epub 2011 Jul 28.
3
Systems-epigenomics inference of transcription factor activity implicates aryl-hydrocarbon-receptor inactivation as a key event in lung cancer development.系统表观基因组学推断转录因子活性表明芳香烃受体失活是肺癌发展中的一个关键事件。
Genome Biol. 2017 Dec 20;18(1):236. doi: 10.1186/s13059-017-1366-0.
4
Evolution of DNA methylome from precancerous lesions to invasive lung adenocarcinomas.从癌前病变到浸润性肺腺癌的 DNA 甲基组演变。
Nat Commun. 2021 Jan 29;12(1):687. doi: 10.1038/s41467-021-20907-z.
5
An integrated epigenomic-transcriptomic landscape of lung cancer reveals novel methylation driver genes of diagnostic and therapeutic relevance.肺癌的综合表观基因组-转录组图谱揭示了具有诊断和治疗意义的新型甲基化驱动基因。
Theranostics. 2021 Mar 11;11(11):5346-5364. doi: 10.7150/thno.58385. eCollection 2021.
6
Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis.肺鳞状细胞癌癌前病变的分子特征分析确定了逐步致癌过程中涉及的机制。
Cancer Prev Res (Phila). 2014 May;7(5):487-95. doi: 10.1158/1940-6207.CAPR-13-0372. Epub 2014 Mar 11.
7
Multi-omics analysis at epigenomics and transcriptomics levels reveals prognostic subtypes of lung squamous cell carcinoma.多组学分析在表观基因组学和转录组学水平揭示了肺鳞状细胞癌的预后亚型。
Biomed Pharmacother. 2020 May;125:109859. doi: 10.1016/j.biopha.2020.109859. Epub 2020 Feb 7.
8
Immune evasion before tumour invasion in early lung squamous carcinogenesis.肿瘤侵袭前的早期肺鳞癌免疫逃逸。
Nature. 2019 Jul;571(7766):570-575. doi: 10.1038/s41586-019-1330-0. Epub 2019 Jun 26.
9
Global analysis of DNA methylation changes during progression of oral cancer.口腔癌进展过程中 DNA 甲基化变化的全局分析。
Oral Oncol. 2013 Nov;49(11):1033-42. doi: 10.1016/j.oraloncology.2013.08.005. Epub 2013 Sep 13.
10
DNA copy number aberrations in endobronchial lesions: a validated predictor for cancer.支气管内病变中的 DNA 拷贝数异常:癌症的一种经验证的预测因子。
Thorax. 2014 May;69(5):451-7. doi: 10.1136/thoraxjnl-2013-203821. Epub 2013 Nov 13.

引用本文的文献

1
alveolar macrophages accelerate the progression of precancerous atypical adenomatous hyperplasia by promoting the angiogenic function regulated by fatty acid metabolism.肺泡巨噬细胞通过促进由脂肪酸代谢调节的血管生成功能,加速癌前非典型腺瘤样增生的进展。
Elife. 2025 Jul 14;13:RP101731. doi: 10.7554/eLife.101731.
2
Attention-based deep learning for analysis of pathology images and gene expression data in lung squamous premalignant lesions.基于注意力的深度学习用于肺鳞状上皮癌前病变的病理图像和基因表达数据分析
medRxiv. 2025 Jun 12:2025.06.06.25328492. doi: 10.1101/2025.06.06.25328492.
3
Advances in Lung Cancer Basic and Translational Research in 2025 - Overview and Perspectives Focusing on NSCLC.

本文引用的文献

1
MutationalPatterns: comprehensive genome-wide analysis of mutational processes.突变模式:全面的全基因组突变过程分析。
Genome Med. 2018 Apr 25;10(1):33. doi: 10.1186/s13073-018-0539-0.
2
Developmental History Provides a Roadmap for the Emergence of Tumor Plasticity.发育史为肿瘤可塑性的出现提供了路线图。
Dev Cell. 2018 Mar 26;44(6):679-693.e5. doi: 10.1016/j.devcel.2018.02.024.
3
Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.端粒酶:一种从全基因组测序数据中估计端粒长度的非整倍体方法。
2025年肺癌基础与转化研究进展——聚焦非小细胞肺癌的综述与展望
J Thorac Oncol. 2025 Jun 3. doi: 10.1016/j.jtho.2025.05.024.
4
Real-Time Evolutionary Landscape of the Bronchial Epithelium and Corresponding Dynamic Immune Cell Alterations in Lung Squamous Cell Carcinogenesis.肺鳞状细胞癌发生过程中支气管上皮的实时进化景观及相应的动态免疫细胞改变
Adv Sci (Weinh). 2025 Aug;12(31):e13256. doi: 10.1002/advs.202413256. Epub 2025 Jun 5.
5
High resolution clonal architecture of hypomutated Wilms tumours.低突变型肾母细胞瘤的高分辨率克隆结构
Nat Commun. 2025 May 29;16(1):4647. doi: 10.1038/s41467-025-59854-4.
6
Cross-tissue multicellular coordination and its rewiring in cancer.跨组织多细胞协调及其在癌症中的重新布线。
Nature. 2025 May 28. doi: 10.1038/s41586-025-09053-4.
7
Aberrant basal cell clonal dynamics shape early lung carcinogenesis.异常的基底细胞克隆动力学塑造早期肺癌发生过程。
Science. 2025 Jun 12;388(6752):eads9145. doi: 10.1126/science.ads9145.
8
Predicting the Evolution of Lung Squamous Cell Carcinoma In Situ Using Computational Pathology.使用计算病理学预测原位肺鳞状细胞癌的演变
Bioengineering (Basel). 2025 Apr 2;12(4):377. doi: 10.3390/bioengineering12040377.
9
Tumor Heterogeneity and the Immune Response in Non-Small Cell Lung Cancer: Emerging Insights and Implications for Immunotherapy.非小细胞肺癌中的肿瘤异质性与免疫反应:免疫治疗的新见解及意义
Cancers (Basel). 2025 Mar 19;17(6):1027. doi: 10.3390/cancers17061027.
10
Intratumoral heterogeneity and drug resistance in cancer.肿瘤内异质性与癌症耐药性
Cancer Cell Int. 2025 Mar 18;25(1):103. doi: 10.1186/s12935-025-03734-w.
Sci Rep. 2018 Jan 22;8(1):1300. doi: 10.1038/s41598-017-14403-y.
4
Universal Patterns of Selection in Cancer and Somatic Tissues.癌症和体细胞组织中的普遍选择模式。
Cell. 2017 Nov 16;171(5):1029-1041.e21. doi: 10.1016/j.cell.2017.09.042. Epub 2017 Oct 19.
5
Preinvasive disease of the airway.气道的癌前疾病。
Cancer Treat Rev. 2017 Jul;58:77-90. doi: 10.1016/j.ctrv.2017.05.009. Epub 2017 Jul 10.
6
Inactivating mutations and hypermethylation of the NKX2-1/TTF-1 gene in non-terminal respiratory unit-type lung adenocarcinomas.非终末呼吸单位型肺腺癌中NKX2-1/TTF-1基因的失活突变和高甲基化
Cancer Sci. 2017 Sep;108(9):1888-1896. doi: 10.1111/cas.13313. Epub 2017 Jul 29.
7
Tracking the Evolution of Non-Small-Cell Lung Cancer.跟踪非小细胞肺癌的演变。
N Engl J Med. 2017 Jun 1;376(22):2109-2121. doi: 10.1056/NEJMoa1616288. Epub 2017 Apr 26.
8
ascatNgs: Identifying Somatically Acquired Copy-Number Alterations from Whole-Genome Sequencing Data.ascatNgs:从全基因组测序数据中识别体细胞获得性拷贝数改变
Curr Protoc Bioinformatics. 2016 Dec 8;56:15.9.1-15.9.17. doi: 10.1002/cpbi.17.
9
cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data.cgpCaVEMan包装器:为在NGS数据中检测体细胞单核苷酸变异而对CaVEMan进行的简单执行。
Curr Protoc Bioinformatics. 2016 Dec 8;56:15.10.1-15.10.18. doi: 10.1002/cpbi.20.
10
KEGG: new perspectives on genomes, pathways, diseases and drugs.京都基因与基因组百科全书(KEGG):关于基因组、通路、疾病和药物的新视角。
Nucleic Acids Res. 2017 Jan 4;45(D1):D353-D361. doi: 10.1093/nar/gkw1092. Epub 2016 Nov 28.