University of Southern California, Department of Biological Sciences, Los Angeles, California, USA.
University of Southern California, Department of Biological Sciences, Los Angeles, California, USA
J Bacteriol. 2019 Mar 13;201(7). doi: 10.1128/JB.00430-18. Print 2019 Apr 1.
Horizontal gene transfer is responsible for the exchange of many types of genetic elements, including plasmids. Properties of the exchanged genetic element are known to influence the efficiency of transfer via the mechanisms of conjugation, transduction, and transformation. Recently, an alternative general pathway of horizontal gene transfer has been identified, namely, gene exchange by extracellular vesicles. Although extracellular vesicles have been shown to facilitate the exchange of several types of plasmids, the influence of plasmid characteristics on genetic exchange within vesicles is unclear. Here, a set of different plasmids was constructed to systematically test the impact of plasmid properties, specifically, plasmid copy number, size, and origin of replication, on gene transfer in vesicles. The influence of each property on the production, packaging, and uptake of vesicles containing bacterial plasmids was quantified, revealing how plasmid properties modulate vesicle-mediated horizontal gene transfer. The loading of plasmids into vesicles correlates with the plasmid copy number and is influenced by characteristics that help set the number of plasmids within a cell, including size and origin of replication. Plasmid origin also has a separate impact on both vesicle loading and uptake, demonstrating that the origin of replication is a major determinant of the propensity of specific plasmids to transfer within extracellular vesicles. Extracellular vesicle formation and exchange are common within bacterial populations. Vesicles package multiple types of biomolecules, including genetic material. The exchange of extracellular vesicles containing genetic material facilitates interspecies DNA transfer and may be a promiscuous mechanism of horizontal gene transfer. Unlike other mechanisms of horizontal gene transfer, it is unclear whether characteristics of the exchanged DNA impact the likelihood of transfer in vesicles. Here, we systematically examine the influence of plasmid copy number, size, and origin of replication on the loading of DNA into vesicles and the uptake of DNA containing vesicles by recipient cells. These results reveal how each plasmid characteristic impacts gene transfer in vesicles and contribute to a greater understanding of the importance of vesicle-mediated gene exchange in the landscape of horizontal gene transfer.
水平基因转移负责交换多种类型的遗传元件,包括质粒。已发现交换的遗传元件的特性会通过接合、转导和转化等机制影响转移的效率。最近,已经确定了一种替代的水平基因转移的一般途径,即通过细胞外囊泡进行基因交换。尽管已经表明细胞外囊泡有助于几种类型的质粒的交换,但质粒特征对囊泡内遗传交换的影响尚不清楚。在这里,构建了一组不同的质粒,以系统地测试质粒特性(特别是质粒拷贝数、大小和复制起点)对囊泡内基因转移的影响。量化了每个特性对含有细菌质粒的囊泡的产生、包装和摄取的影响,揭示了质粒特性如何调节囊泡介导的水平基因转移。质粒装入囊泡与质粒拷贝数相关,并受到有助于确定细胞内质粒数量的特性的影响,包括大小和复制起点。质粒起源也对囊泡装载和摄取有独立的影响,表明复制起点是特定质粒在细胞外囊泡内转移倾向的主要决定因素。细胞外囊泡的形成和交换在细菌群体中很常见。囊泡包装多种类型的生物分子,包括遗传物质。含有遗传物质的细胞外囊泡的交换促进了种间 DNA 转移,并且可能是一种混杂的水平基因转移机制。与其他水平基因转移机制不同,交换的 DNA 的特性是否影响囊泡内转移的可能性尚不清楚。在这里,我们系统地研究了质粒拷贝数、大小和复制起点对 DNA 装入囊泡和受体细胞摄取含 DNA 囊泡的影响。这些结果揭示了每个质粒特征如何影响囊泡内的基因转移,并有助于更好地理解囊泡介导的基因交换在水平基因转移格局中的重要性。