Suppr超能文献

双功能酶内的结构域串扰为芳香族氨基酸生物合成提供了催化和变构功能。

Domain cross-talk within a bifunctional enzyme provides catalytic and allosteric functionality in the biosynthesis of aromatic amino acids.

机构信息

From the Maurice Wilkins Centre, Ferrier Research Institute, Victoria University of Wellington, Wellington 6012 and.

the Maurice Wilkins Centre, Biomolecular Interaction Centre and Department of Chemistry, University of Canterbury, Christchurch 8041, New Zealand.

出版信息

J Biol Chem. 2019 Mar 29;294(13):4828-4842. doi: 10.1074/jbc.RA118.005220. Epub 2019 Jan 22.

Abstract

Because of their special organization, multifunctional enzymes play crucial roles in improving the performance of metabolic pathways. For example, the bacterium contains a distinctive bifunctional protein comprising a 3-deoxy-d- heptulosonate-7-phosphate synthase (DAH7PS), catalyzing the first reaction of the biosynthetic pathway of aromatic amino acids, and a chorismate mutase (CM), functioning at a branch of this pathway leading to the synthesis of tyrosine and phenylalanine. In this study, we characterized this enzyme and found that its two catalytic activities exhibit substantial hetero-interdependence and that the separation of its two distinct catalytic domains results in a dramatic loss of both DAH7PS and CM activities. The protein displayed a unique dimeric assembly, with dimerization solely via the CM domain. Small angle X-ray scattering (SAXS)-based structural analysis of this protein indicated a DAH7PS-CM hetero-interaction between the DAH7PS and CM domains, unlike the homo-association between DAH7PS domains normally observed for other DAH7PS proteins. This hetero-interaction provides a structural basis for the functional interdependence between the two domains observed here. Moreover, we observed that DAH7PS is allosterically inhibited by prephenate, the product of the CM-catalyzed reaction. This allostery was accompanied by a striking conformational change as observed by SAXS, implying that altering the hetero-domain interaction underpins the allosteric inhibition. We conclude that for this C-terminal CM-linked DAH7PS, catalytic function and allosteric regulation appear to be delivered by a common mechanism, revealing a distinct and efficient evolutionary strategy to utilize the functional advantages of a bifunctional enzyme.

摘要

由于其特殊的组织,多功能酶在改善代谢途径的性能方面起着至关重要的作用。例如,细菌含有一种独特的双功能蛋白,由 3-脱氧-d-赤藓糖-7-磷酸合酶(DAH7PS)和分支酸变位酶(CM)组成,前者催化芳香族氨基酸生物合成途径的第一个反应,后者在该途径的一个分支中起作用,导致酪氨酸和苯丙氨酸的合成。在这项研究中,我们对这种酶进行了表征,发现其两种催化活性表现出显著的异源相互依存性,并且其两个不同的催化结构域的分离导致 DAH7PS 和 CM 活性的显著丧失。该蛋白显示出独特的二聚体组装,仅通过 CM 结构域进行二聚化。该蛋白的小角 X 射线散射(SAXS)结构分析表明,DAH7PS 和 CM 结构域之间存在 DAH7PS-CM 异源相互作用,而不同于其他 DAH7PS 蛋白通常观察到的 DAH7PS 结构域的同源聚合。这种异源相互作用为这里观察到的两个结构域之间的功能相互依赖提供了结构基础。此外,我们观察到 DAH7PS 被 CM 催化反应的产物预苯酸别构抑制。这种别构作用伴随着 SAXS 观察到的显著构象变化,表明改变异源结构域相互作用是别构抑制的基础。我们的结论是,对于这种 C 端与 CM 相连的 DAH7PS,催化功能和别构调节似乎由共同的机制提供,揭示了一种独特而有效的进化策略,以利用双功能酶的功能优势。

相似文献

8
Exploring modular allostery via interchangeable regulatory domains.通过可互换的调节域探索模块化变构。
Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3006-3011. doi: 10.1073/pnas.1717621115. Epub 2018 Mar 5.

本文引用的文献

1
Exploring modular allostery via interchangeable regulatory domains.通过可互换的调节域探索模块化变构。
Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3006-3011. doi: 10.1073/pnas.1717621115. Epub 2018 Mar 5.
4
Comparative Protein Structure Modeling Using MODELLER.使用MODELLER进行蛋白质结构比较建模。
Curr Protoc Protein Sci. 2016 Nov 1;86:2.9.1-2.9.37. doi: 10.1002/cpps.20.
10
Pfam: the protein families database.Pfam:蛋白质家族数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验