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COL5A2在肌层浸润性膀胱癌患者中的作用:对涉及787名受试者和29个细胞系的公共数据集的生物信息学分析

The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines.

作者信息

Meng Xiang-Yu, Shi Ming-Jun, Zeng Zi-Hang, Chen Chen, Liu Tong-Zu, Wu Qiu-Ji, Li Shuo, Li Sheng

机构信息

Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan, China.

Institut Curie, PSL Research University, CNRS, UMR 144, Paris, France.

出版信息

Front Oncol. 2019 Jan 15;8:659. doi: 10.3389/fonc.2018.00659. eCollection 2018.

DOI:10.3389/fonc.2018.00659
PMID:30697528
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6340941/
Abstract

Bladder cancer (BC) is one of the most common malignancies. Two previous studies identified collagen type V alpha 2 (COL5A2) as a potential biomarker in BC, both are simple reanalysis of a single transcriptomic dataset without subgroup analysis for muscle-invasive BC (MIBC). We focused in MIBC patients and explored the role of COL5A2 from an integration perspective, using refined methodology covering individual participant data meta-analysis and bioinformatics analysis. Eight transcriptomic datasets of 787 MIBC patients (including one dataset containing genomic mutation information) and two drug sensitivity datasets of 29 cell lines in which more than 250 compounds were analyzed. We found subjects with increased COL5A2 gene expression exhibited poorer prognosis, and the power analysis confirmed adequate sample size. FGFR3 was the only gene differential mutated between the COL5A2 high and low expression groups. Differential expression and co-expression network analysis suggested potential association between COL5A2 expression and essential pathways involved in cancer invasion and dissemination, including cell adhesion, extracellular matrix organization, and epithelial-mesenchymal transition. Coordinately, analysis of drug screening datasets and gene-drug interaction also revealed COL5A2 expression linked to cell morphogenesis, angiogenesis, blood vessel development, and urogenital development. The utility and feasibility of COL5A2 for clinically applicable prognosis prediction and risk classification and the exact underlying molecular mechanism should be further investigated in subsequent studies.

摘要

膀胱癌(BC)是最常见的恶性肿瘤之一。此前两项研究将Ⅴ型胶原蛋白α2(COL5A2)鉴定为膀胱癌的一种潜在生物标志物,但这两项研究均只是对单个转录组数据集进行简单的重新分析,并未对肌层浸润性膀胱癌(MIBC)进行亚组分析。我们聚焦于MIBC患者,从整合的角度探讨COL5A2的作用,采用了涵盖个体参与者数据荟萃分析和生物信息学分析的精细方法。纳入了787例MIBC患者的8个转录组数据集(包括一个包含基因突变信息的数据集)以及29个细胞系的两个药物敏感性数据集,其中分析了250多种化合物。我们发现COL5A2基因表达升高的患者预后较差,效能分析证实样本量充足。FGFR3是COL5A2高表达组和低表达组之间唯一发生差异突变的基因。差异表达和共表达网络分析表明COL5A2表达与癌症侵袭和播散所涉及的关键通路之间存在潜在关联,包括细胞黏附、细胞外基质组织和上皮-间质转化。同时,药物筛选数据集分析和基因-药物相互作用分析也显示COL5A2表达与细胞形态发生、血管生成、血管发育和泌尿生殖系统发育有关。COL5A2在临床适用的预后预测和风险分类中的实用性和可行性以及确切的潜在分子机制应在后续研究中进一步探讨。

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本文引用的文献

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Advances in risk stratification of bladder cancer to guide personalized medicine.膀胱癌风险分层以指导个性化医疗的进展。
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Emerging biomarkers and targeted therapies in urothelial carcinoma.尿路上皮癌中的新兴生物标志物与靶向治疗
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Overview of Current and Future Adjuvant Therapy for Muscle-Invasive Urothelial Carcinoma.肌层浸润性尿路上皮癌当前和未来辅助治疗概述。
基于二硫键连接的细胞焦亡相关血管生成基因构建及验证膀胱癌预后模型
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Integrated analysis of bulk and single-cell RNA-seq data reveals cell differentiation-related subtypes and a scoring system in bladder cancer.基于 bulk 和单细胞 RNA-seq 数据的综合分析揭示膀胱癌中与细胞分化相关的亚型和评分系统。
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Perineural Invasion Is Associated With Function-evoked Pain and Altered Extracellular Matrix in Patients With Head and Neck Squamous Cell Carcinoma.神经周围侵犯与头颈部鳞状细胞癌患者的功能诱发疼痛和细胞外基质改变有关。
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COL5A2 drives regorafenib resistance-induced metastatic phenotype via reducing LIFR expression in hepatocellular carcinoma.COL5A2通过降低肝细胞癌中LIFR的表达来驱动瑞戈非尼耐药诱导的转移表型。
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Clinical significance and immune landscape of angiogenesis-related genes in bladder cancer.膀胱癌中血管生成相关基因的临床意义和免疫图谱。
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Epidemiology of urothelial carcinoma.尿路上皮癌的流行病学
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