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转化代谢:组学时代精准诊断先天性代谢缺陷的多学科方法。

Translational Metabolism: A multidisciplinary approach towards precision diagnosis of inborn errors of metabolism in the omics era.

机构信息

Laboratory Genetic Metabolic Diseases, Department of Clinical Chemistry, Emma Children's Hospital, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.

Laboratory Genetic Metabolic Diseases, Department of Pediatrics, Emma Children's Hospital, Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.

出版信息

J Inherit Metab Dis. 2019 Mar;42(2):197-208. doi: 10.1002/jimd.12008. Epub 2019 Feb 5.

Abstract

The laboratory diagnosis of inborn errors of metabolism has been revolutionized in recent years, thanks to the amazing developments in the field of DNA sequencing including whole exome and whole genome sequencing (WES and WGS). Interpretation of the results coming from WES and/or WGS analysis is definitely not trivial especially since the biological relevance of many of the variants identified by WES and/or WGS, have not been tested experimentally and prediction programs like POLYPHEN-2 and SIFT are far from perfect. Correct interpretation of WES and/or WGS results can only be achieved by performing functional studies at multiple levels (different metabolomics platforms, enzymology, in vitro and in vivo flux analysis), often requires studies in model organisms like zebra fish, Caenorhabditis elegans, Saccharomyces cerevisiae, mutant mice and others, and also requires the input of many different disciplines to make this Translational Metabolism approach effective.

摘要

近年来,由于 DNA 测序领域的惊人发展,包括外显子组和全基因组测序(WES 和 WGS),先天性代谢错误的实验室诊断发生了革命性变化。对 WES 和/或 WGS 分析结果的解释绝非易事,特别是因为 WES 和/或 WGS 鉴定的许多变体的生物学相关性尚未经过实验测试,而且像 POLYPHEN-2 和 SIFT 这样的预测程序远非完美。只有通过在多个层次上进行功能研究(不同的代谢组学平台、酶学、体外和体内通量分析),才能正确解释 WES 和/或 WGS 结果,这通常需要在斑马鱼、秀丽隐杆线虫、酿酒酵母、突变小鼠等模式生物中进行研究,还需要许多不同学科的参与,才能使这种转化代谢方法有效。

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