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已知的模块、无序的应激蛋白,即脱水蛋白的进化。

Evolution of the modular, disordered stress proteins known as dehydrins.

机构信息

Graduate Program in Bioinformatics, University of Guelph, Guelph, Ontario, Canada.

Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.

出版信息

PLoS One. 2019 Feb 6;14(2):e0211813. doi: 10.1371/journal.pone.0211813. eCollection 2019.

Abstract

Dehydrins, plant proteins that are upregulated during dehydration stress conditions, have modular sequences that can contain three conserved motifs (the Y-, S-, and K-segments). The presence and order of these motifs are used to classify dehydrins into one of five architectures: Kn, SKn, KnS, YnKn, and YnSKn, where the subscript n describes the number of copies of that motif. In this study, an architectural and phylogenetic analysis was performed on 426 dehydrin sequences that were identified in 53 angiosperm and 3 gymnosperm genomes. It was found that angiosperms contained all five architectures, while gymnosperms only contained Kn and SKn dehydrins. This suggests that the ancestral dehydrin in spermatophytes was either Kn or SKn, and the Y-segment containing dehydrins first arose in angiosperms. A high-level split between the YnSKn dehydrins from either the Kn or SKn dehydrins could not be confidently identified, however, two lower level architectural divisions appear to have occurred after different duplication events. The first likely occurred after a whole genome duplication, resulting in the duplication of a Y3SK2 dehydrin; the duplicate subsequently lost an S- and K- segment to become a Y3K1 dehydrin. The second split occurred after a tandem duplication of a Y1SK2 dehydrin, where the duplicate lost both the Y- and S- segment and gained four K-segments, resulting in a K6 dehydrin. We suggest that the newly arisen Y3K1 dehydrin is possibly on its way to pseudogenization, while the newly arisen K6 dehydrin developed a novel function in cold protection.

摘要

脱水素是在脱水胁迫条件下上调表达的植物蛋白,具有模块化序列,可包含三个保守基序(Y-、S-和 K-片段)。这些基序的存在和顺序用于将脱水素分类为五种结构之一:Kn、SKn、KnS、YnKn 和 YnSKn,其中下标 n 描述该基序的重复次数。在这项研究中,对在 53 种被子植物和 3 种裸子植物基因组中鉴定出的 426 种脱水素序列进行了结构和系统发育分析。结果发现,被子植物包含所有五种结构,而裸子植物仅包含 Kn 和 SKn 脱水素。这表明,在种子植物中,祖先的脱水素要么是 Kn 要么是 SKn,而含有 Y 片段的脱水素首先在被子植物中出现。虽然无法确定 YnSKn 脱水素是否源自 Kn 或 SKn,但似乎在不同的重复事件之后发生了两个较低级别的结构分裂。第一个可能发生在全基因组复制之后,导致 Y3SK2 脱水素的重复;随后,该重复丢失 S-和 K-片段,成为 Y3K1 脱水素。第二个分裂发生在 Y1SK2 脱水素的串联重复之后,其中重复丢失了 Y-和 S-片段,并获得了四个 K-片段,形成了 K6 脱水素。我们认为,新出现的 Y3K1 脱水素可能正在走向假基因化,而新出现的 K6 脱水素在冷保护中发展出了一种新的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b4fd/6364937/f829f11ced5a/pone.0211813.g001.jpg

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