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被子植物脱水素基因家族的进化分析揭示了与特定蛋白质结构域相关的三个直系同源组。

Evolutionary analysis of angiosperm dehydrin gene family reveals three orthologues groups associated to specific protein domains.

机构信息

Laboratorio de Agrobiotecnología, Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.

Instituto de Biodiversidad y Biología Experimental y Aplicada, Consejo Nacional de Investigaciones Científicas y Técnicas-Universidad de Buenos Aires (IBBEA, CONICET-UBA), Buenos Aires, Argentina.

出版信息

Sci Rep. 2021 Dec 13;11(1):23869. doi: 10.1038/s41598-021-03066-5.

Abstract

Dehydrins (DHNs) are a family of plant proteins that play important roles on abiotic stress tolerance and seed development. They are classified into five structural subgroups: K-, SK-, YK-, YSK-, and KS-DHNs, according to the presence of conserved motifs named K-, Y- and S- segments. We carried out a comparative structural and phylogenetic analysis of these proteins, focusing on the less-studied KS-type DHNs. A search for conserved motifs in DHNs from 56 plant genomes revealed that KS-DHNs possess a unique and highly conserved N-terminal, 15-residue amino acid motif, not previously described. This novel motif, that we named H-segment, is present in DHNs of angiosperms, gymnosperms and lycophytes, suggesting that HKS-DHNs were present in the first vascular plants. Phylogenetic and microsynteny analyses indicate that the five structural subgroups of angiosperm DHNs can be assigned to three groups of orthologue genes, characterized by the presence of the H-, F- or Y- segments. Importantly, the hydrophilin character of DHNs correlate with the phylogenetic origin of the DHNs rather than to the traditional structural subgroups. We propose that angiosperm DHNs can be ultimately subdivided into three orthologous groups, a phylogenetic framework that should help future studies on the evolution and function of this protein family.

摘要

脱水素(DHN)是一类植物蛋白,在非生物胁迫耐受和种子发育中发挥重要作用。根据保守基序 K-、Y-和 S- 段的存在,它们被分为 K-、SK-、YK-、YSK-和 KS-DHN 五个结构亚群。我们对这些蛋白质进行了比较结构和系统发育分析,重点研究了研究较少的 KS 型 DHN。在来自 56 个植物基因组的 DHN 中搜索保守基序表明,KS-DHN 具有独特且高度保守的 15 个氨基酸残基的 N 端基序,以前没有描述过。这个新的基序,我们命名为 H 段,存在于被子植物、裸子植物和石松植物的 DHN 中,表明 HKS-DHN 存在于第一批维管植物中。系统发育和微同线性分析表明,被子植物 DHN 的五个结构亚群可以分为三组同源基因,其特征是存在 H-、F-或 Y-段。重要的是,DHN 的亲水特性与 DHN 的系统发育起源相关,而不是与传统的结构亚群相关。我们提出,被子植物 DHN 最终可以分为三个同源组,这一系统发育框架应有助于未来对该蛋白家族进化和功能的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcdc/8669000/99f6948b1753/41598_2021_3066_Fig1_HTML.jpg

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