Institute of Biology and Biotechnology, Faculty of Natural Sciences, University of Ss. Cyril and Methodius in Trnava, Nám. J. Herdu 2, 917 01 Trnava, Slovakia.
Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center Slovak Academy of Sciences, Akademická 2, P.O. Box 39A, 950 07 Nitra, Slovakia.
Biomolecules. 2024 Feb 20;14(3):250. doi: 10.3390/biom14030250.
We conducted analyses on 253 protein sequences (Pfam00257) derived from 25 woody plant species, including trees, shrubs, and vines. Our goal was to gain insights into their architectural types, biochemical characteristics, and potential involvement in mitigating abiotic stresses, such as drought, cold, or salinity. The investigated protein sequences (253) comprised 221 angiosperms (85 trees/shrubs and 36 vines) and 32 gymnosperms. Our sequence analyses revealed the presence of seven architectural types: K, KS, SK, YK, YSK, FSK, and FK. The FSK type predominated in tree and shrub dehydrins of both gymnosperms and angiosperms, while the YnSKn type was more prevalent in vine dehydrins. The YSK and YK types were absent in gymnosperms. Gymnosperm dehydrins exhibited a shift towards more negative GRAVY scores and Fold Indexes. Additionally, they demonstrated a higher Lys content and lower His content. By analyzing promoter sequences in the angiosperm species, including trees, shrubs, and vines, we found that these dehydrins are induced by the ABA-dependent and light-responsive pathways. The presence of stress- and hormone-related cis-elements suggests a protective effect against dehydration, cold, or salinity. These findings could serve as a foundation for future studies on woody dehydrins, especially in the context of biotechnological applications.
我们分析了 253 个来自 25 种木本植物物种(Pfam00257)的蛋白质序列,包括树木、灌木和藤本植物。我们的目标是深入了解它们的结构类型、生化特性以及在减轻非生物胁迫(如干旱、寒冷或盐度)方面的潜在作用。所研究的蛋白质序列(253 个)包括 221 种被子植物(85 种树木/灌木和 36 种藤本植物)和 32 种裸子植物。我们的序列分析揭示了存在七种结构类型:K、KS、SK、YK、YSK、FSK 和 FK。FSK 类型在裸子植物和被子植物的树木和灌木脱水素中占主导地位,而 YnSKn 类型在藤本植物脱水素中更为普遍。YK 和 YSK 类型在裸子植物中不存在。裸子植物脱水素表现出更负的 GRAVY 评分和折叠指数。此外,它们还表现出更高的赖氨酸含量和更低的组氨酸含量。通过分析包括树木、灌木和藤本植物在内的被子植物物种的启动子序列,我们发现这些脱水素是由 ABA 依赖性和光响应途径诱导的。存在与应激和激素相关的顺式元件表明它们具有抵抗脱水、寒冷或盐度的保护作用。这些发现可以为未来关于木本脱水素的研究,特别是在生物技术应用方面,提供基础。