Michalczyk Mariusz, Zierkiewicz Wiktor, Wysokiński Rafał, Scheiner Steve
Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże, Wyspiańskiego 27, 50-370, Wrocław, Poland.
Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, 84322-0300, United States.
Chemphyschem. 2019 Apr 2;20(7):959-966. doi: 10.1002/cphc.201900072. Epub 2019 Mar 7.
In order to accommodate the approach of two NCH bases, a tetrahedral TF molecule (T=Si, Ge, Sn, Pb) distorts into an octahedral structure in which the two bases can be situated either cis or trans to one another. The square planar geometry of TF , associated with the trans arrangement of the bases, is higher in energy than its see-saw structure that corresponds to the cis trimer. On the other hand, the square geometry offers an unobstructed path of the bases to the π-holes above and below the tetrel atom and hence enjoys a higher interaction energy than is the case for the σ-holes approached by the bases in the cis arrangement. When these two effects are combined, the total binding energies are more exothermic for the cis than for the trans complexes. This preference amounts to some 3 kcal mol for Sn and Pb, but is amplified for the smaller tetrel atoms.
为了适应两个NCH碱基的靠近方式,四面体TF分子(T = Si、Ge、Sn、Pb)会扭曲成八面体结构,其中两个碱基可以彼此处于顺式或反式位置。与碱基反式排列相关的TF平面正方形几何结构的能量高于其对应于顺式三聚体的跷跷板结构。另一方面,正方形几何结构为碱基提供了一条通向四价原子上下方π空穴的无障碍路径,因此比顺式排列中碱基接近的σ空穴具有更高的相互作用能。当这两种效应结合时,顺式配合物的总结合能比反式配合物更放热。对于Sn和Pb,这种偏好约为3 kcal mol,但对于较小的四价原子,这种偏好会增强。