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图上随机进化动力学的逼近方法。

Methods for approximating stochastic evolutionary dynamics on graphs.

机构信息

Department of Mathematical Sciences, University of Liverpool, Mathematical Sciences Building, Liverpool L69 7ZL, UK.

Department of Mathematics, City, University of London, Northampton Square, London EC1V 0HB, UK.

出版信息

J Theor Biol. 2019 May 7;468:45-59. doi: 10.1016/j.jtbi.2019.02.009. Epub 2019 Feb 14.

Abstract

Population structure can have a significant effect on evolution. For some systems with sufficient symmetry, analytic results can be derived within the mathematical framework of evolutionary graph theory which relate to the outcome of the evolutionary process. However, for more complicated heterogeneous structures, computationally intensive methods are required such as individual-based stochastic simulations. By adapting methods from statistical physics, including moment closure techniques, we first show how to derive existing homogenised pair approximation models and the exact neutral drift model. We then develop node-level approximations to stochastic evolutionary processes on arbitrarily complex structured populations represented by finite graphs, which can capture the different dynamics for individual nodes in the population. Using these approximations, we evaluate the fixation probability of invading mutants for given initial conditions, where the dynamics follow standard evolutionary processes such as the invasion process. Comparisons with the output of stochastic simulations reveal the effectiveness of our approximations in describing the stochastic processes and in predicting the probability of fixation of mutants on a wide range of graphs. Construction of these models facilitates a systematic analysis and is valuable for a greater understanding of the influence of population structure on evolutionary processes.

摘要

种群结构对进化有显著影响。对于一些具有足够对称性的系统,可以在进化图论的数学框架内推导出解析结果,这些结果与进化过程的结果有关。然而,对于更复杂的异构结构,需要计算密集型方法,例如基于个体的随机模拟。通过采用统计物理学中的方法,包括矩闭合技术,我们首先展示如何推导出现有的均匀化对近似模型和精确中性漂移模型。然后,我们为任意复杂结构的种群开发了节点级别的随机进化过程的近似方法,这些方法可以捕捉种群中个体节点的不同动态。使用这些近似方法,我们可以评估给定初始条件下入侵突变体的固定概率,其中动态遵循标准进化过程,例如入侵过程。与随机模拟的输出进行比较表明,我们的近似方法在描述随机过程和预测突变体在广泛的图上固定的概率方面非常有效。这些模型的构建有助于系统分析,对于更好地理解种群结构对进化过程的影响具有重要价值。

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