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一种高效、经济的设计功能金属蛋白的策略。

An efficient, step-economical strategy for the design of functional metalloproteins.

机构信息

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.

Department of Chemistry, University of California, Irvine, Irvine, CA, USA.

出版信息

Nat Chem. 2019 May;11(5):434-441. doi: 10.1038/s41557-019-0218-9. Epub 2019 Feb 18.

Abstract

The bottom-up design and construction of functional metalloproteins remains a formidable task in biomolecular design. Although numerous strategies have been used to create new metalloproteins, pre-existing knowledge of the tertiary and quaternary protein structure is often required to generate suitable platforms for robust metal coordination and activity. Here we report an alternative and easily implemented approach (metal active sites by covalent tethering or MASCoT) in which folded protein building blocks are linked by a single disulfide bond to create diverse metal coordination environments within evolutionarily naive protein-protein interfaces. Metalloproteins generated using this strategy uniformly bind a wide array of first-row transition metal ions (Mn, Fe, Co, Ni, Cu, Zn and vanadyl) with physiologically relevant thermodynamic affinities (dissociation constants ranging from 700 nM for Mn to 50 fM for Cu). MASCoT readily affords coordinatively unsaturated metal centres-including a penta-His-coordinated non-haem Fe site-and well-defined binding pockets that can accommodate modifications and enable coordination of exogenous ligands such as nitric oxide to the interfacial metal centre.

摘要

在生物分子设计中,功能性金属蛋白的自下而上设计和构建仍然是一项艰巨的任务。尽管已经使用了许多策略来创建新的金属蛋白,但为了生成适合于稳健金属配位和活性的合适平台,通常需要预先了解三级和四级蛋白质结构的知识。在这里,我们报告了一种替代的、易于实施的方法(通过共价键连接的金属活性位点或 MASCoT),其中通过单个二硫键将折叠的蛋白质构建块连接在一起,从而在进化上幼稚的蛋白质-蛋白质界面内创建多样化的金属配位环境。使用这种策略生成的金属蛋白均匀地结合广泛的第一过渡金属离子(Mn、Fe、Co、Ni、Cu、Zn 和钒酰),具有生理相关的热力学亲和力(解离常数范围从 700 nM 的 Mn 到 50 fM 的 Cu)。MASCoT 易于提供配位不饱和的金属中心,包括五配位的非血红素 Fe 位和明确定义的结合口袋,这些口袋可以容纳修饰,并能够将外源性配体(如一氧化氮)配位到界面金属中心。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1056/6483823/e70e235fe523/nihms-1518570-f0002.jpg

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