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群体内有限的序列多样性支持益生元RNA复制。

Limited Sequence Diversity Within a Population Supports Prebiotic RNA Reproduction.

作者信息

Mizuuchi Ryo, Lehman Niles

机构信息

Department of Chemistry, Portland State University, Portland, OR 97207, USA.

出版信息

Life (Basel). 2019 Feb 21;9(1):20. doi: 10.3390/life9010020.

DOI:10.3390/life9010020
PMID:30795529
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6463154/
Abstract

The origins of life require the emergence of informational polymers capable of reproduction. In the RNA world on the primordial Earth, reproducible RNA molecules would have arisen from a mixture of compositionally biased, poorly available, short RNA sequences in prebiotic environments. However, it remains unclear what level of sequence diversity within a small subset of population is required to initiate RNA reproduction by prebiotic mechanisms. Here, using a simulation for template-directed recombination and ligation, we explore the effect of sequence diversity in a given population for the onset of RNA reproduction. We show that RNA reproduction is improbable in low and high diversity of finite populations; however, it could robustly occur in an intermediate sequence diversity. The intermediate range broadens toward higher diversity as population size increases. We also found that emergent reproducible RNAs likely form autocatalytic networks and collectively reproduce by catalyzing the formation of each other, allowing the expansion of information capacity. These results highlight the potential of abiotic RNAs, neither abundant nor diverse, to kick-start autocatalytic reproduction through spontaneous network formation.

摘要

生命的起源需要能够进行复制的信息聚合物的出现。在原始地球上的RNA世界中,可复制的RNA分子可能起源于益生元环境中成分有偏差、可用性差的短RNA序列的混合物。然而,目前尚不清楚在一小部分群体中需要何种程度的序列多样性才能通过益生元机制启动RNA复制。在这里,我们使用模板导向的重组和连接模拟,探讨给定群体中的序列多样性对RNA复制起始的影响。我们表明,在有限群体的低多样性和高多样性情况下,RNA复制不太可能发生;然而,它可能在中等序列多样性中稳健地发生。随着群体规模的增加,中间范围向更高的多样性扩展。我们还发现,出现的可复制RNA可能形成自催化网络,并通过催化彼此的形成来集体复制,从而实现信息容量的扩展。这些结果突出了既不丰富也不多样的非生物RNA通过自发形成网络启动自催化复制的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/fa266bd05fc3/life-09-00020-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/0d744a899221/life-09-00020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/1b8a6d2632df/life-09-00020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/bfcb492d9ccf/life-09-00020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/a5220ab760ec/life-09-00020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/86e88389b6ea/life-09-00020-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/fa266bd05fc3/life-09-00020-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/0d744a899221/life-09-00020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/1b8a6d2632df/life-09-00020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/bfcb492d9ccf/life-09-00020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/a5220ab760ec/life-09-00020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/86e88389b6ea/life-09-00020-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ae2/6463154/fa266bd05fc3/life-09-00020-g006.jpg

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本文引用的文献

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RNA. 2019 Apr;25(4):453-464. doi: 10.1261/rna.068908.118. Epub 2019 Jan 22.
2
Random-sequence genetic oligomer pools display an innate potential for ligation and recombination.随机序列遗传寡聚体库显示出固有连接和重组的潜力。
Elife. 2018 Nov 21;7:e43022. doi: 10.7554/eLife.43022.
3
Exploring the Emergence of RNA Nucleosides and Nucleotides on the Early Earth.探索早期地球上核糖核苷和核苷酸的出现。
Life (Basel). 2018 Nov 6;8(4):57. doi: 10.3390/life8040057.
4
pH-Driven RNA Strand Separation under Prebiotically Plausible Conditions.在可能存在的前生物条件下由pH驱动的RNA链分离
Biochemistry. 2018 Nov 13;57(45):6382-6386. doi: 10.1021/acs.biochem.8b01080. Epub 2018 Nov 5.
5
Sustainable replication and coevolution of cooperative RNAs in an artificial cell-like system.在人工细胞样系统中合作 RNA 的可持续复制和共同进化。
Nat Ecol Evol. 2018 Oct;2(10):1654-1660. doi: 10.1038/s41559-018-0650-z. Epub 2018 Aug 27.
6
Coupled catabolism and anabolism in autocatalytic RNA sets.自催化 RNA 体系中的偶联分解代谢和合成代谢。
Nucleic Acids Res. 2018 Oct 12;46(18):9660-9666. doi: 10.1093/nar/gky598.
7
Transient compartmentalization of RNA replicators prevents extinction due to parasites.RNA 复制子的瞬时分隔可防止因寄生虫而灭绝。
Science. 2016 Dec 9;354(6317):1293-1296. doi: 10.1126/science.aag1582.
8
Nonenzymatic copying of RNA templates containing all four letters is catalyzed by activated oligonucleotides.含有全部四种碱基的RNA模板的非酶促复制由活化的寡核苷酸催化。
Elife. 2016 Jun 28;5:e17756. doi: 10.7554/eLife.17756.
9
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