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变形链球菌生物膜形成及新型调控蛋白 BrpA 同源物潜在抑制剂的计算筛选

Biofilm development and computational screening for new putative inhibitors of a homolog of the regulatory protein BrpA in Streptococcus dysgalactiae subsp. dysgalactiae.

机构信息

UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.

UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal; Department of Immunology, School of Biological Sciences, Madurai Kamaraj University, Madurai, 625021, India.

出版信息

Int J Med Microbiol. 2019 May-Jun;309(3-4):169-181. doi: 10.1016/j.ijmm.2019.02.001. Epub 2019 Feb 19.

DOI:10.1016/j.ijmm.2019.02.001
PMID:30799091
Abstract

Streptococcus dysgalactiae subsp. dysgalactiae (SDSD), a Lancefield group C streptococci (GCS), is a frequent cause of bovine mastitis. This highly prevalent disease is the costliest in dairy industry. Adherence and biofilm production are important factors in streptoccocal pathogenesis. We have previously described the adhesion and internalization of SDSD isolates in human cells and now we describe the biofilm production capability of this bacterium. In this work we integrated microbiology, imaging and computational methods to evaluate the biofilm production capability of SDSD isolates; to assess the presence of biofilm regulatory protein BrpA homolog in the biofilm producers; and to predict a structural model of BrpA-like protein and its binding to putative inhibitors. Our results show that SDSD isolates form biofilms on abiotic surface such as glass (hydrophilic) and polystyrene (hydrophobic), with the strongest biofilm formation observed in glass. This ability was mainly associated with a proteinaceous extracellular matrix, confirmed by the dispersion of the biofilms after proteinase K and trypsin treatment. The biofilm formation in SDSD isolates was also confirmed by confocal laser scanning microscopy (CLSM) and scanning electron microscopy (SEM). Under SEM observation, VSD16 isolate formed cell aggregates during biofilm growth while VSD9 and VSD10 formed smooth and filmy layers. We show that brpA-like gene is present and expressed in SDSD biofilm-producing isolates and its expression levels correlated with the biofilm production capability, being more expressed in the late exponential phase of planktonic growth compared to biofilm growth. Fisetin, a known biofilm inhibitor and a putative BrpA binding molecule, dramatically inhibited biofilm formation by the SDSD isolates but did not affect planktonic growth, at the tested concentrations. Homology modeling was used to predict the 3D structure of BrpA-like protein. Using high throughput virtual screening and molecular docking, we selected five ligand molecules with strong binding affinity to the hydrophobic cleft of the protein, making them potential inhibitor candidates of the SDSD BrpA-like protein. These results warrant further investigations for developing novel strategies for SDSD anti-biofilm therapy.

摘要

无乳链球菌(SDSD)是一种兰斯菲尔德 C 群链球菌(GCS),是牛乳腺炎的常见病因。这种高发性疾病是乳制品行业成本最高的疾病。黏附和生物膜的产生是链球菌发病机制中的重要因素。我们之前已经描述了 SDSD 分离株在人类细胞中的黏附和内化,现在我们描述了这种细菌的生物膜产生能力。在这项工作中,我们综合了微生物学、成像和计算方法来评估 SDSD 分离株的生物膜产生能力;评估生物膜产生者中是否存在生物膜调节蛋白 BrpA 同源物;并预测 BrpA 样蛋白的结构模型及其与假定抑制剂的结合。我们的结果表明,SDSD 分离株在非生物表面(如玻璃(亲水性)和聚苯乙烯(疏水性))上形成生物膜,在玻璃上观察到最强的生物膜形成。这种能力主要与蛋白质细胞外基质有关,这一点通过蛋白酶 K 和胰蛋白酶处理后生物膜的分散得到证实。SDSD 分离株的生物膜形成也通过共聚焦激光扫描显微镜(CLSM)和扫描电子显微镜(SEM)得到证实。在 SEM 观察下,VSD16 分离株在生物膜生长过程中形成细胞聚集物,而 VSD9 和 VSD10 形成光滑的丝状层。我们表明,brpA 样基因存在于 SDSD 生物膜产生分离株中并表达,其表达水平与生物膜产生能力相关,在浮游生长的指数后期与生物膜生长相比表达更高。非瑟酮,一种已知的生物膜抑制剂和假定的 BrpA 结合分子,在测试浓度下,显著抑制 SDSD 分离株的生物膜形成,但不影响浮游生长。同源建模用于预测 BrpA 样蛋白的 3D 结构。使用高通量虚拟筛选和分子对接,我们选择了五个与蛋白疏水裂缝具有强结合亲和力的配体分子,使它们成为 SDSD BrpA 样蛋白的潜在抑制剂候选物。这些结果为开发 SDSD 抗生物膜治疗的新策略提供了进一步的研究依据。

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