Recent studies have provided evidence for a role of duration-tuned channels in the encoding of duration. Duration encoding in these channels is thought to reflect the time between responses to the onset and offset of an event. This notion is in apparent conflict with studies that demonstrate that the perceived duration of an event can vary independently from the time separating its perceived onset and offset. Instead, these studies suggest that duration encoding is sensitive to other temporal aspects of a sensory event. In the current study, we investigated whether duration-tuned channels encode duration based on the time between the on- and offset of an event (onset-offset duration), or if they encode a duration corresponding to the perceived duration of that event. We used a duration illusion to dissociate onset-offset duration and perceived duration and measured whether repeated exposure to illusion-inducing stimuli caused adaptation to the onset-offset duration or the perceived duration of these illusion-inducing stimuli. We report clear evidence for adaptation to the onset-offset duration of illusion-inducing stimuli. This finding supports the notion that duration-tuned mechanisms respond to the time between the onset and offset of an event, without necessarily reflecting the duration perceived, and eventually reported by the participant. Implications for the duration channel model and the mechanisms underlying duration illusions are discussed.