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全基因组分析、扩展和干旱及热胁迫下普通小麦(T. aestivum L.)NAC 家族的表达。

Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.).

机构信息

UMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.

出版信息

PLoS One. 2019 Mar 6;14(3):e0213390. doi: 10.1371/journal.pone.0213390. eCollection 2019.

DOI:10.1371/journal.pone.0213390
PMID:30840709
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6402696/
Abstract

The NAC family is one of the largest plant-specific transcription factor families, and some of its members are known to play major roles in plant development and response to biotic and abiotic stresses. Here, we inventoried 488 NAC members in bread wheat (Triticum aestivum). Using the recent release of the wheat genome (IWGS RefSeq v1.0), we studied duplication events focusing on genomic regions from 4B-4D-5A chromosomes as an example of the family expansion and neofunctionalization of TaNAC members. Differentially expressed TaNAC genes in organs and in response to abiotic stresses were identified using publicly available RNAseq data. Expression profiling of 23 selected candidate TaNAC genes was studied in leaf and grain from two bread wheat genotypes at two developmental stages in field drought conditions and revealed insights into their specific and/or overlapping expression patterns. This study showed that, of the 23 TaNAC genes, seven have a leaf-specific expression and five have a grain-specific expression. In addition, the grain-specific genes profiles in response to drought depend on the genotype. These genes may be considered as potential candidates for further functional validation and could present an interest for crop improvement programs in response to climate change. Globally, the present study provides new insights into evolution, divergence and functional analysis of NAC gene family in bread wheat.

摘要

NAC 家族是植物中最大的转录因子家族之一,其部分成员在植物发育和应对生物及非生物胁迫方面发挥着重要作用。在这里,我们对面包小麦(Triticum aestivum)中的 488 个 NAC 成员进行了编目。利用最近发布的小麦基因组(IWGS RefSeq v1.0),我们以 4B-4D-5A 染色体的基因组区域为例,研究了基因重复事件,以此来研究 TaNAC 成员的家族扩张和新功能化。使用公开的 RNAseq 数据,我们鉴定了在不同器官中差异表达的 TaNAC 基因以及对非生物胁迫的响应。在田间干旱条件下,对来自两个面包小麦基因型的两个发育阶段的叶片和籽粒中 23 个候选 TaNAC 基因进行了表达谱分析,揭示了它们特定的和/或重叠的表达模式。这项研究表明,在 23 个 TaNAC 基因中,有 7 个具有叶片特异性表达,有 5 个具有籽粒特异性表达。此外,对干旱的籽粒特异性基因表达谱依赖于基因型。这些基因可以被认为是进一步功能验证的潜在候选基因,并且可能对应对气候变化的作物改良计划具有重要意义。总的来说,本研究为面包小麦 NAC 基因家族的进化、分化和功能分析提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5a/6402696/6ef9e5e4f3c9/pone.0213390.g009.jpg
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