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酵母 Rad7-Elc1 复合物的晶体结构和 Rad7-Rad16-Elc1-Cul3 复合物的组装。

Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex.

机构信息

National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; School of Medicine, Sun Yat-Sen University, Guangzhou 510275, China.

School of Life Science and Engineering, Foshan University, Guangdong, China.

出版信息

DNA Repair (Amst). 2019 May;77:1-9. doi: 10.1016/j.dnarep.2019.02.012. Epub 2019 Feb 22.

DOI:10.1016/j.dnarep.2019.02.012
PMID:30840920
Abstract

Nucleotide excision repair (NER) is a versatile system that deals with various bulky and helix-distorting DNA lesions caused by UV and environmental mutagens. Based on how lesion recognition occurs, NER has been separated into global genome repair (GGR) and transcription-coupled repair (TCR). The yeast Rad7-Rad16 complex is indispensable for the GGR sub-pathway. Rad7-Rad16 binds to UV-damaged DNA in a synergistic fashion with Rad4, the main lesion recognizer, to achieve efficient recognition of lesions. In addition, Rad7-Rad16 associates with Elc1 and Cul3 to form an EloC-Cul-SOCS-box (ECS)-type E3 ubiquitin ligase complex that ubiquitinates Rad4 in response to UV radiation. However, the structure and architecture of the Rad7-Rad16-Elc1-Cul3 complex remain unsolved. Here, we determined the structure of the Rad7-Elc1 complex and revealed key interaction regions responsible for the formation of the Rad7-Rad16-Elc1-Cul3 complex. These results provide new insights into the assembly of the Rad7-Rad16-Elc1-Cul3 complex and structural framework for further studies.

摘要

核苷酸切除修复(NER)是一种多功能系统,可处理由 UV 和环境诱变剂引起的各种大体积和螺旋扭曲的 DNA 损伤。根据损伤识别如何发生,NER 已分为全基因组修复(GGR)和转录偶联修复(TCR)。酵母 Rad7-Rad16 复合物对于 GGR 亚途径是必不可少的。Rad7-Rad16 与主要损伤识别器 Rad4 以协同方式结合到 UV 损伤的 DNA 上,以实现对损伤的有效识别。此外,Rad7-Rad16 与 Elc1 和 Cul3 结合形成 EloC-Cul-SOCS 盒(ECS)型 E3 泛素连接酶复合物,该复合物响应 UV 辐射泛素化 Rad4。然而,Rad7-Rad16-Elc1-Cul3 复合物的结构和架构仍然未解决。在这里,我们确定了 Rad7-Elc1 复合物的结构,并揭示了负责形成 Rad7-Rad16-Elc1-Cul3 复合物的关键相互作用区域。这些结果为 Rad7-Rad16-Elc1-Cul3 复合物的组装提供了新的见解,并为进一步研究提供了结构框架。

相似文献

1
Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex.酵母 Rad7-Elc1 复合物的晶体结构和 Rad7-Rad16-Elc1-Cul3 复合物的组装。
DNA Repair (Amst). 2019 May;77:1-9. doi: 10.1016/j.dnarep.2019.02.012. Epub 2019 Feb 22.
2
Yeast Elc1 plays an important role in global genomic repair but not in transcription coupled repair.酵母Elc1在全基因组修复中起重要作用,但在转录偶联修复中不起作用。
DNA Repair (Amst). 2009 Jan 1;8(1):40-50. doi: 10.1016/j.dnarep.2008.08.010. Epub 2008 Oct 7.
3
The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products.酿酒酵母的RAD7、RAD16和RAD23基因:体外转录非依赖性核苷酸切除修复的需求以及基因产物之间的相互作用。
Mol Cell Biol. 1997 Feb;17(2):635-43. doi: 10.1128/MCB.17.2.635.
4
Functionally distinct nucleosome-free regions in yeast require Rad7 and Rad16 for nucleotide excision repair.酵母中功能不同的无核小体区域需要Rad7和Rad16进行核苷酸切除修复。
DNA Repair (Amst). 2008 May 3;7(5):734-43. doi: 10.1016/j.dnarep.2008.01.016. Epub 2008 Mar 10.
5
The yeast RAD7 and RAD16 genes are required for postincision events during nucleotide excision repair. In vitro and in vivo studies with rad7 and rad16 mutants and purification of a Rad7/Rad16-containing protein complex.酵母RAD7和RAD16基因是核苷酸切除修复过程中切口后事件所必需的。对rad7和rad16突变体进行的体外和体内研究以及对含Rad7/Rad16蛋白复合物的纯化。
J Biol Chem. 1998 Nov 6;273(45):29481-8. doi: 10.1074/jbc.273.45.29481.
6
The yeast Rad7/Rad16/Abf1 complex generates superhelical torsion in DNA that is required for nucleotide excision repair.酵母Rad7/Rad16/Abf1复合物在DNA中产生超螺旋扭转,这是核苷酸切除修复所必需的。
DNA Repair (Amst). 2004 Mar 4;3(3):277-87. doi: 10.1016/j.dnarep.2003.11.004.
7
Requirement of ELC1 for RNA polymerase II polyubiquitylation and degradation in response to DNA damage in Saccharomyces cerevisiae.酿酒酵母中ELC1对RNA聚合酶II多聚泛素化及响应DNA损伤时降解的需求
Mol Cell Biol. 2006 Jun;26(11):3999-4005. doi: 10.1128/MCB.00293-06.
8
The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae.RAD7和RAD16基因对于从沉默交配型基因座去除嘧啶二聚体至关重要,在酿酒酵母中,修复活性基因的非转录链也需要这两个基因。
Mol Cell Biol. 1994 Sep;14(9):6135-42. doi: 10.1128/mcb.14.9.6135-6142.1994.
9
The NEF4 complex regulates Rad4 levels and utilizes Snf2/Swi2-related ATPase activity for nucleotide excision repair.NEF4复合物调节Rad4水平,并利用与Snf2/Swi2相关的ATP酶活性进行核苷酸切除修复。
Mol Cell Biol. 2004 Jul;24(14):6362-78. doi: 10.1128/MCB.24.14.6362-6378.2004.
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Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor.酵母Rad7-Rad16复合物是一种ATP依赖性DNA损伤传感器,对非转录DNA链的核苷酸切除修复具有特异性。
J Biol Chem. 1997 Aug 29;272(35):21665-8. doi: 10.1074/jbc.272.35.21665.

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