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细菌外膜模型的物理特性:中子反射率测量法和分子模拟。

Physical Properties of Bacterial Outer Membrane Models: Neutron Reflectometry & Molecular Simulation.

机构信息

ISIS Pulsed Neutron and Muon Source, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Oxford Campus, Didcot, Oxfordshire, United Kingdom.

Departments of Biological Sciences and Bioengineering, Lehigh University, Bethlehem, Pennsylvania.

出版信息

Biophys J. 2019 Mar 19;116(6):1095-1104. doi: 10.1016/j.bpj.2019.02.001. Epub 2019 Feb 10.

Abstract

The outer membrane (OM) of Gram-negative bacteria is an asymmetric bilayer having phospholipids in the inner leaflet and lipopolysaccharides in the outer leaflet. This unique asymmetry and the complex carbohydrates in lipopolysaccharides make it a daunting task to study the asymmetrical OM structure and dynamics, its interactions with OM proteins, and its roles in translocation of substrates, including antibiotics. In this study, we combine neutron reflectometry and molecular simulation to explore the physical properties of OM mimetics. There is excellent agreement between experiment and simulation, allowing experimental testing of the conclusions from simulations studies and also atomistic interpretation of the behavior of experimental model systems, such as the degree of lipid asymmetry, the lipid component (tail, head, and sugar) profiles along the bilayer normal, and lateral packing (i.e., average surface area per lipid). Therefore, the combination of both approaches provides a powerful new means to explore the biological and biophysical behavior of the bacterial OM.

摘要

革兰氏阴性细菌的外膜(OM)是一种不对称双层膜,内层含有磷脂,外层含有脂多糖。这种独特的不对称性和脂多糖中的复杂碳水化合物使得研究不对称 OM 结构和动力学、其与 OM 蛋白的相互作用以及其在底物(包括抗生素)转运中的作用成为一项艰巨的任务。在这项研究中,我们结合中子反射测量和分子模拟来探索 OM 类似物的物理性质。实验和模拟之间具有极好的一致性,允许对模拟研究的结论进行实验测试,也可以对实验模型系统的行为进行原子解释,例如脂质不对称的程度、脂质成分(尾部、头部和糖)在双层法向方向上的分布以及侧向堆积(即,每个脂质的平均表面积)。因此,这两种方法的结合为探索细菌 OM 的生物学和生物物理行为提供了一种强大的新手段。

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本文引用的文献

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