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基于年龄的新生儿筛查中全基因组测序结果评估框架。

An Age-Based Framework for Evaluating Genome-Scale Sequencing Results in Newborn Screening.

机构信息

Department of Genetics, UNC Chapel Hill, Chapel Hill, NC.

Department of Genetics, UNC Chapel Hill, Chapel Hill, NC; Department of Pathology and Laboratory Medicine, UNC Chapel Hill, Chapel Hill, NC.

出版信息

J Pediatr. 2019 Jun;209:68-76. doi: 10.1016/j.jpeds.2018.12.027. Epub 2019 Mar 7.

Abstract

OBJECTIVE

To assess the performance of a standardized, age-based metric for scoring clinical actionability to evaluate conditions for inclusion in newborn screening and compare it with the results from other contemporary methods.

STUDY DESIGN

The North Carolina Newborn Exome Sequencing for Universal Screening study developed an age-based, semiquantitative metric to assess the clinical actionability of gene-disease pairs and classify them with respect to age of onset or timing of interventions. This categorization was compared with the gold standard Recommended Uniform Screening Panel and other methods to evaluate gene-disease pairs for newborn genomic sequencing.

RESULTS

We assessed 822 gene-disease pairs, enriched for pediatric onset of disease and suspected actionability. Of these, 466 were classified as having childhood onset and high actionability, analogous to conditions selected for the Recommended Uniform Screening Panel core panel. Another 245 were classified as having childhood onset and low to no actionability, 25 were classified as having adult onset and high actionability, 19 were classified as having adult onset and low to no actionability, and 67 were excluded due to controversial evidence and/or prenatal onset.

CONCLUSIONS

This study describes a novel method to facilitate decisions about the potential use of genomic sequencing for newborn screening. These categories may assist parents and physicians in making informed decisions about the disclosure of results from voluntary genomic sequencing in children.

摘要

目的

评估一种基于标准化年龄的临床可操作性评分指标在评估纳入新生儿筛查条件方面的性能,并将其与其他当代方法的结果进行比较。

研究设计

北卡罗来纳州新生儿外显子组测序用于普遍筛查研究开发了一种基于年龄的半定量指标,用于评估基因-疾病对的临床可操作性,并根据发病年龄或干预时机对其进行分类。这种分类与黄金标准推荐的统一筛查面板和其他方法进行了比较,以评估新生儿基因组测序的基因-疾病对。

结果

我们评估了 822 个基因-疾病对,这些基因-疾病对主要是儿科疾病发病和疑似可操作性的富集。其中,466 对被归类为具有儿童发病和高可操作性,类似于推荐的统一筛查面板核心面板中选择的条件。另外 245 对被归类为具有儿童发病和低至无可操作性,25 对被归类为具有成人发病和高可操作性,19 对被归类为具有成人发病和低至无可操作性,67 对由于争议性证据和/或产前发病而被排除在外。

结论

本研究描述了一种新的方法,以促进关于基因组测序在新生儿筛查中潜在用途的决策。这些类别可以帮助父母和医生在自愿进行的儿童基因组测序结果的披露方面做出明智的决定。

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