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SelProm:一种用于……的可查询和预测性表达载体选择工具

SelProm: A Queryable and Predictive Expression Vector Selection Tool for .

作者信息

Jervis Adrian J, Carbonell Pablo, Taylor Sandra, Sung Rehana, Dunstan Mark S, Robinson Christopher J, Breitling Rainer, Takano Eriko, Scrutton Nigel S

机构信息

Manchester Synthetic Biology Research Centre for Fine and Speciality Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology and School of Chemistry , University of Manchester , Manchester M1 7DN , U.K.

出版信息

ACS Synth Biol. 2019 Jul 19;8(7):1478-1483. doi: 10.1021/acssynbio.8b00399. Epub 2019 Mar 18.

Abstract

The rapid prototyping and optimization of plasmid-based recombinant gene expression is one of the key steps in the development of bioengineered bacterial systems. Often, multiple genes or gene modules need to be coexpressed, and for this purpose compatible, inducible plasmid systems have been developed. However, inducible expression systems are not favored in industrial processes, due to their prohibitive cost, and consequently the conversion to constitutive expression systems is often desired. Here we present a set of constitutive-expression plasmids for this purpose, which were benchmarked using fluorescent reporter genes. To further facilitate the conversion between inducible and constitutive expression systems, we developed SelProm, a design tool that serves as a parts repository of plasmid expression strength and predicts portability rules between constitutive and inducible plasmids through model comparison and machine learning. The SelProm tool is freely available at http://selprom.synbiochem.co.uk .

摘要

基于质粒的重组基因表达的快速原型制作与优化是生物工程细菌系统开发中的关键步骤之一。通常,多个基因或基因模块需要共表达,为此已开发出兼容的、可诱导的质粒系统。然而,由于成本过高,可诱导表达系统在工业生产过程中并不受欢迎,因此常常希望转换为组成型表达系统。在此,我们为此目的展示了一组组成型表达质粒,并使用荧光报告基因对其进行了基准测试。为了进一步促进可诱导和组成型表达系统之间的转换,我们开发了SelProm,这是一种设计工具,可作为质粒表达强度的元件库,并通过模型比较和机器学习预测组成型和可诱导质粒之间的移植规则。SelProm工具可在http://selprom.synbiochem.co.uk免费获取。

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