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从膨胀活性污泥中分离和鉴定噬菌体AJO2及其基因组特征

Isolation and Genomic Characterization of an Bacteriophage AJO2 From Bulking Activated Sludge.

作者信息

Fan Niansi, Yang Min, Jin Rencun, Qi Rong

机构信息

College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China.

State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, University of Chinese Academy of Sciences, Beijing, China.

出版信息

Front Microbiol. 2019 Feb 20;10:266. doi: 10.3389/fmicb.2019.00266. eCollection 2019.

Abstract

A novel lytic phage AJO2, specifically infecting , was isolated from bulking activated sludge. The one-step growth experiment showed that the latent period and burst size of AJO2 were estimated to be 30 min and 78.1 phages per infected cell, respectively. The viability test indicated that neutral conditions (pH 6-8) were table for AJO2 survival, while it was sensitive to high temperature (≥60°C) and ultraviolet treatment (254 nm). Genomic sequencing revealed that the AJO2 had a linearly permuted, double-stranded (ds) DNA consisting of 38,124 bp, with the G+C content of 41 mol%. A total of 58 putative open reading frames (ORFs), 11 pairs of repeats and 11 promoters were identified. The AJO2 genome had a modular gene structure which shared some similarities to those of phages. However, genomic comparative analysis revealed many differences among them, and novel genes were identified in the AJO2 genome. These results contribute to subsequent researches on the interaction between bacteriophages and hosts in wastewater treatment, especially during the bulking period. Additionally, the newly isolated phage could be a good candidate as a therapeutic agent to control nosocomial infections caused by

摘要

从膨胀活性污泥中分离出一种新型裂解性噬菌体AJO2,它能特异性感染……。一步生长实验表明,AJO2的潜伏期和裂解量分别估计为30分钟和每个感染细胞78.1个噬菌体。活力测试表明,中性条件(pH 6 - 8)有利于AJO2存活,而它对高温(≥60°C)和紫外线处理(254 nm)敏感。基因组测序显示,AJO2具有一条线性排列的双链(ds)DNA,由38,124 bp组成,G + C含量为41 mol%。共鉴定出58个推定的开放阅读框(ORF)、11对重复序列和11个启动子。AJO2基因组具有模块化的基因结构,与某些噬菌体的基因结构有一些相似之处。然而,基因组比较分析揭示了它们之间的许多差异,并且在AJO2基因组中鉴定出了新基因。这些结果有助于后续关于噬菌体与宿主在废水处理中相互作用的研究,特别是在膨胀期。此外,新分离的噬菌体可能是控制由……引起的医院感染的治疗剂的良好候选者。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9068/6401600/5fbfea337c3b/fmicb-10-00266-g001.jpg

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