Department of Microbiology, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Department of Biology, McMaster University, Hamilton, ON, Canada.
Mol Genet Genomics. 2019 Jun;294(3):739-755. doi: 10.1007/s00438-019-01545-z. Epub 2019 Mar 16.
The legume endosymbiont Sinorhizobium meliloti can utilize a broad range of carbon compounds to support its growth. The linear, six-carbon polyol galactitol is abundant in vascular plants and is metabolized in S. meliloti by the contribution of two loci SMb21372-SMb21377 and SMc01495-SMc01503 which are found on pSymB and the chromosome, respectively. The data suggest that several transport systems, including the chromosomal ATP-binding cassette (ABC) transporter smoEFGK, contribute to the uptake of galactitol, while the adjacent gene smoS encodes a protein for oxidation of galactitol into tagatose. Subsequently, genes SMb21374 and SMb21373, encode proteins that phosphorylate and epimerize tagatose into fructose-6-phosphate, which is further metabolized by the enzymes of the Entner-Doudoroff pathway. Of note, it was found that SMb21373, which was annotated as a 1,6-bis-phospho-aldolase, is homologous to the E. coli gene gatZ, which is annotated as encoding the non-catalytic subunit of a tagatose-1,6-bisphosphate aldolase heterodimer. When either of these genes was introduced into an Agrobacterium tumefaciens strain that carries a tagatose-6-phosphate epimerase mutation, they are capable of complementing the galactitol growth deficiency associated with this mutation, strongly suggesting that these genes are both epimerases. Phylogenetic analysis of the protein family (IPR012062) to which these enzymes belong, suggests that this misannotation is systemic throughout the family. S. meliloti galactitol catabolic mutants do not exhibit symbiotic deficiencies or the inability to compete for nodule occupancy.
豆科植物内生菌根瘤菌 Sinorhizobium meliloti 可以利用广泛的碳化合物来支持其生长。线性六碳多元醇半乳糖醇在维管植物中含量丰富,在 S. meliloti 中通过两个基因座 SMb21372-SMb21377 和 SMc01495-SMc01503 的贡献进行代谢,这两个基因座分别位于 pSymB 和染色体上。数据表明,包括染色体 ATP 结合盒(ABC)转运蛋白 smoEFGK 在内的几个转运系统有助于半乳糖醇的摄取,而相邻基因 smoS 编码一种将半乳糖醇氧化成塔格糖的蛋白质。随后,SMb21374 和 SMb21373 基因编码的蛋白质将塔格糖磷酸化并差向异构化为果糖-6-磷酸,进一步通过 Entner-Doudoroff 途径的酶代谢。值得注意的是,发现被注释为 1,6-双磷酸醛缩酶的 SMb21373 与大肠杆菌基因 gatZ 同源,该基因被注释为编码塔格糖-1,6-双磷酸醛缩酶异二聚体的非催化亚基。当这些基因中的任何一个被引入携带塔格糖-6-磷酸差向异构酶突变的根瘤农杆菌菌株中时,它们都能够补充与该突变相关的半乳糖醇生长缺陷,这强烈表明这些基因都是差向异构酶。对属于这些酶的蛋白家族(IPR012062)的系统发育分析表明,这种错误注释在整个家族中是系统性的。S. meliloti 半乳糖醇分解代谢突变体不会表现出共生缺陷或无法竞争占据根瘤。