Nandi Apurba, Qu Chen, Bowman Joel M
Department of Chemistry and Cherry L. Emerson Center for Scientific Computation , Emory University , Atlanta , Georgia 30322 , United States.
J Chem Theory Comput. 2019 May 14;15(5):2826-2835. doi: 10.1021/acs.jctc.9b00043. Epub 2019 Apr 1.
We describe software to incorporate electronic energies and gradients to develop high-dimensional potential energy surfaces, using a permutationally invariant polynomial basis. The energies and gradients are obtained using direct dynamics, using the efficient B3LYP/6-31+G(d) level of theory. The new software is described along with extensive testing and assessment of the benefits of using gradients as well as energies for CH. Starting with a data set of 9000 configurations, we examine training and testing on data sets of energies only and energies plus gradients with data sets as small as 50. In addition to standard root-mean-square fitting errors of energies and gradients, normal-mode analyses and diffusion Monte Carlo calculations are performed to examine the fidelity of the fits using gradients. We show that a precisely fitted potential surface can be obtained using energies and gradients with only 100 or even just 50 widely scattered configurations. Finally, several fits are done using all the data from direct-dynamics trajectories with 1000 steps. These are more demanding fits compared to the one based on pruning data sets. The results of these fits are encouraging.
我们描述了一种软件,该软件利用置换不变多项式基来纳入电子能量和梯度,以开发高维势能面。能量和梯度通过直接动力学获得,采用高效的B3LYP/6-31+G(d)理论水平。介绍了该新软件,并对使用梯度以及CH的能量的益处进行了广泛测试和评估。从9000个构型的数据集开始,我们研究了仅使用能量数据集以及能量加梯度数据集(小至50个)进行的训练和测试。除了能量和梯度的标准均方根拟合误差外,还进行了正态模式分析和扩散蒙特卡罗计算,以检验使用梯度进行拟合的保真度。我们表明,仅使用100个甚至仅50个广泛分散的构型的能量和梯度,就可以获得精确拟合的势能面。最后,使用来自1000步直接动力学轨迹的所有数据进行了几次拟合。与基于修剪数据集的拟合相比,这些拟合要求更高。这些拟合的结果令人鼓舞。