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测量加权人类疾病网络中顶点的重要性。

Measuring the importance of vertices in the weighted human disease network.

机构信息

Department of Computer Science, Memorial University, St. John's, NL, Canada.

出版信息

PLoS One. 2019 Mar 22;14(3):e0205936. doi: 10.1371/journal.pone.0205936. eCollection 2019.

Abstract

Many human genetic disorders and diseases are known to be related to each other through frequently observed co-occurrences. Studying the correlations among multiple diseases provides an important avenue to better understand the common genetic background of diseases and to help develop new drugs that can treat multiple diseases. Meanwhile, network science has seen increasing applications on modeling complex biological systems, and can be a powerful tool to elucidate the correlations of multiple human diseases. In this article, known disease-gene associations were represented using a weighted bipartite network. We extracted a weighted human diseases network from such a bipartite network to show the correlations of diseases. Subsequently, we proposed a new centrality measurement for the weighted human disease network (WHDN) in order to quantify the importance of diseases. Using our centrality measurement to quantify the importance of vertices in WHDN, we were able to find a set of most central diseases. By investigating the 30 top diseases and their most correlated neighbors in the network, we identified disease linkages including known disease pairs and novel findings. Our research helps better understand the common genetic origin of human diseases and suggests top diseases that likely induce other related diseases.

摘要

许多人类遗传疾病和病症已知通过频繁观察到的共同发生而相互关联。研究多种疾病之间的相关性提供了一种重要的途径,可以更好地了解疾病的共同遗传背景,并帮助开发可以治疗多种疾病的新药。同时,网络科学在建模复杂的生物系统方面得到了越来越多的应用,并且可以成为阐明多种人类疾病相关性的有力工具。在本文中,使用加权二分网络表示已知的疾病-基因关联。我们从这样的二分网络中提取了加权人类疾病网络,以显示疾病之间的相关性。随后,我们提出了一种新的加权人类疾病网络(WHDN)的中心度度量,以量化疾病的重要性。使用我们的中心度度量来量化 WHDN 中顶点的重要性,我们能够找到一组最重要的疾病。通过研究网络中的 30 种主要疾病及其最相关的邻居,我们确定了包括已知疾病对和新发现在内的疾病关联。我们的研究有助于更好地了解人类疾病的共同遗传起源,并提示可能引发其他相关疾病的主要疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/91b1/6430629/a991c5a7bc05/pone.0205936.g001.jpg

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