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鉴定 YdhV 为第一个结合大肠杆菌中二钼-MPT 辅因子的钼酶。

Identification of YdhV as the First Molybdoenzyme Binding a Bis-Mo-MPT Cofactor in Escherichia coli.

机构信息

Institute of Biochemistry and Biology , University of Potsdam , Karl-Liebknecht-Strasse 24 , 14476 Potsdam , Germany.

Institute of Experimental Physics, EPR Spectroscopy of Biological Systems , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany.

出版信息

Biochemistry. 2019 Apr 30;58(17):2228-2242. doi: 10.1021/acs.biochem.9b00078. Epub 2019 Apr 17.

Abstract

The oxidoreductase YdhV in Escherichia coli has been predicted to belong to the family of molybdenum/tungsten cofactor (Moco/Wco)-containing enzymes. In this study, we characterized the YdhV protein in detail, which shares amino acid sequence homology with a tungsten-containing benzoyl-CoA reductase binding the bis-W-MPT (for metal-binding pterin) cofactor. The cofactor was identified to be of a bis-Mo-MPT type with no guanine nucleotides present, which represents a form of Moco that has not been found previously in any molybdoenzyme. Our studies showed that YdhV has a preference for bis-Mo-MPT over bis-W-MPT to be inserted into the enzyme. In-depth characterization of YdhV by X-ray absorption and electron paramagnetic resonance spectroscopies revealed that the bis-Mo-MPT cofactor in YdhV is redox active. The bis-Mo-MPT and bis-W-MPT cofactors include metal centers that bind the four sulfurs from the two dithiolene groups in addition to a cysteine and likely a sulfido ligand. The unexpected presence of a bis-Mo-MPT cofactor opens an additional route for cofactor biosynthesis in E. coli and expands the canon of the structurally highly versatile molybdenum and tungsten cofactors.

摘要

大肠杆菌中的氧化还原酶 YdhV 被预测属于钼/钨辅因子(Moco/Wco)- 含有酶的家族。在这项研究中,我们详细描述了 YdhV 蛋白,它与含有钨的苯甲酰辅酶 A 还原酶具有氨基酸序列同源性,该酶结合双 W-MPT(用于金属结合蝶呤)辅因子。该辅因子被鉴定为双 Mo-MPT 型,不存在鸟嘌呤核苷酸,这代表了以前在任何钼酶中都未发现的 Moco 形式。我们的研究表明,YdhV 更倾向于将双 Mo-MPT 而不是双 W-MPT 插入到酶中。通过 X 射线吸收和电子顺磁共振光谱学对 YdhV 的深入表征表明,YdhV 中的双 Mo-MPT 辅因子具有氧化还原活性。双 Mo-MPT 和双 W-MPT 辅因子包含金属中心,这些金属中心结合来自两个二硫烯基团的四个硫原子,以及一个半胱氨酸和可能的硫代配体。双 Mo-MPT 辅因子的意外存在为大肠杆菌中的辅因子生物合成开辟了另一条途径,并扩展了结构高度多功能的钼和钨辅因子的规范。

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