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转录组和蛋白质组分析研究科罗拉多马铃薯甲虫(Leptinotarsa decemlineata)冷响应的分子基础。

Transcriptome and proteome analyses to investigate the molecular underpinnings of cold response in the Colorado potato beetle, Leptinotarsa decemlineata.

机构信息

Department of Chemistry and Biochemistry, Université de Moncton, 18 Antonine-Maillet Avenue, Moncton, New Brunswick, E1A 3E9, Canada.

Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, 850 Lincoln Road, Fredericton, New Brunswick, E3B 4Z7, Canada.

出版信息

Cryobiology. 2019 Jun;88:54-63. doi: 10.1016/j.cryobiol.2019.03.011. Epub 2019 Apr 1.

DOI:10.1016/j.cryobiol.2019.03.011
PMID:30946844
Abstract

The Colorado potato beetle (Leptinotarsa decemlineata (Say)) is an insect that can cope with prolonged periods of low temperatures exposure. The molecular changes required to adapt to such conditions have not been thoroughly investigated in this insect. The current work aims at characterizing deregulated transcripts and proteins in adult L. decemlineata exposed to 15 °C and -5 °C using RNA-sequencing-based transcriptomics and liquid chromatography tandem mass spectrometry (LC-MS/MS)-based proteomics approaches, respectively. RNA-sequencing highlighted the differential expression of several transcripts, including ubiquilin-1 and ubiquitin carboxyl-terminal hydrolase 5, in insects submitted to low temperatures when compared with control insects. In addition, proteomics approach detected 2840 proteins in cold-exposed beetles including elevated levels for 409 proteins and reduced levels for 200 proteins. Cuticular proteins CP1, CP4, CP5 and CP7 as well as eukaryotic translation initiation factor 4B were notable proteins with elevated levels in cold insects. Functional analysis of targets modulated at low temperatures using DAVID indicated processes likely affected under cold conditions including select metabolic cascades and RNA-associated processes. Overall, this work presents molecular candidates impacted by low temperatures exposure in L. decemlineata and builds on the current knowledge associated with response to these conditions in this insect.

摘要

科罗拉多马铃薯甲虫(Leptinotarsa decemlineata(Say))是一种能够应对长时间低温暴露的昆虫。这种昆虫适应这种条件所需的分子变化尚未得到彻底研究。目前的工作旨在使用基于 RNA 测序的转录组学和基于液相色谱串联质谱(LC-MS/MS)的蛋白质组学方法,分别研究成年 L. decemlineata 在 15°C 和-5°C 下的转录本和蛋白质的失调。RNA 测序突出显示了几种转录本的差异表达,包括泛素结合蛋白-1 和泛素羧基末端水解酶 5,与对照昆虫相比,低温处理的昆虫中这些转录本的表达存在差异。此外,蛋白质组学方法在低温暴露的甲虫中检测到 2840 种蛋白质,其中包括 409 种蛋白质的水平升高和 200 种蛋白质的水平降低。表皮蛋白 CP1、CP4、CP5 和 CP7 以及真核翻译起始因子 4B 是高水平的显著蛋白。使用 DAVID 对低温调节的靶标进行功能分析表明,在低温条件下可能会受到影响的过程包括选择代谢级联和 RNA 相关过程。总的来说,这项工作提出了低温暴露对 L. decemlineata 影响的分子候选者,并建立了在这种昆虫中与这些条件反应相关的现有知识基础。

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