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海洋生物膜中 mac 基因的分布、多样性和功能分离。

Distribution, diversity and functional dissociation of the mac genes in marine biofilms.

机构信息

a Department of Ocean Science and Division of Life Science , Hong Kong University of Science and Technology , Hong Kong , PR China.

b Sanya Institute of Deep-sea Science and Engineering , Chinese Academy of Sciences , Hainan , PR China.

出版信息

Biofouling. 2019 Feb;35(2):230-243. doi: 10.1080/08927014.2019.1593384. Epub 2019 Apr 5.

Abstract

Bacteria produce metamorphosis-associated contractile (MAC) structures to induce larval metamorphosis in Hydroides elegans. The distribution and diversity of mac gene homologs in marine environments are largely unexplored. In the present study mac genes were examined in marine environments by analyzing 101 biofilm and 91 seawater metagenomes. There were more mac genes in biofilms than in seawater, and substratum type, location, or sampling time did not affect the mac genes in biofilms. The mac gene clusters were highly diverse and often incomplete while the three MAC components co-occurred with other genes of different functions. Genomic analysis of four Pseudoalteromonas and two Streptomyces strains revealed the mac genes transfers among different microbial taxa. It is proposed that mac genes are more specific to biofilms; gene transfer among different microbial taxa has led to highly diverse mac gene clusters; and in most cases, the three MAC components function individually rather than forming a complex.

摘要

细菌产生与变形相关的收缩(MAC)结构,以诱导秀丽线虫的幼虫变形。海洋环境中 MAC 基因同源物的分布和多样性在很大程度上尚未被探索。在本研究中,通过分析 101 个生物膜和 91 个海水宏基因组,研究了海洋环境中的 mac 基因。生物膜中的 mac 基因多于海水中的 mac 基因,而基质类型、位置或采样时间并不影响生物膜中的 mac 基因。mac 基因簇高度多样化且往往不完整,而三个 MAC 组件与其他不同功能的基因同时存在。对四个假交替单胞菌和两个链霉菌菌株的基因组分析显示,mac 基因在不同微生物类群之间发生了转移。据推测,mac 基因对生物膜更为特异;不同微生物类群之间的基因转移导致了高度多样化的 mac 基因簇;在大多数情况下,三个 MAC 组件单独发挥作用,而不是形成一个复合体。

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