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衰老和转录异质性的来源。

Ageing and sources of transcriptional heterogeneity.

机构信息

Max Planck Research Group 'Chromatin and Ageing', Max Planck Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, D-50931 Cologne, Germany.

Cluster of Excellence in Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany.

出版信息

Biol Chem. 2019 Jun 26;400(7):867-878. doi: 10.1515/hsz-2018-0449.

DOI:10.1515/hsz-2018-0449
PMID:30951493
Abstract

Cellular heterogeneity is an important contributor to biological function and is employed by cells, tissues and organisms to adapt, compensate, respond, defend and/or regulate specific processes. Research over the last decades has revealed that transcriptional noise is a major driver for cell-to-cell variability. In this review we will discuss sources of transcriptional variability, in particular bursting of gene expression and how it could contribute to cellular states and fate decisions. We will highlight recent developments in single cell sequencing technologies that make it possible to address cellular heterogeneity in unprecedented detail. Finally, we will review recent literature, in which these new technologies are harnessed to address pressing questions in the field of ageing research, such as transcriptional noise and cellular heterogeneity in the course of ageing.

摘要

细胞异质性是生物功能的重要贡献者,细胞、组织和生物体利用它来适应、补偿、响应、防御和/或调节特定的过程。过去几十年的研究表明,转录噪声是细胞间变异性的主要驱动因素。在这篇综述中,我们将讨论转录变异性的来源,特别是基因表达的爆发,以及它如何有助于细胞状态和命运决定。我们将强调单细胞测序技术的最新进展,这些技术使得以前所未有的细节解决细胞异质性成为可能。最后,我们将回顾最近的文献,这些新技术被用于解决衰老研究领域的紧迫问题,如衰老过程中的转录噪声和细胞异质性。

相似文献

1
Ageing and sources of transcriptional heterogeneity.衰老和转录异质性的来源。
Biol Chem. 2019 Jun 26;400(7):867-878. doi: 10.1515/hsz-2018-0449.
2
Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity.表观遗传和转录变异性塑造表型可塑性。
Bioessays. 2018 Feb;40(2). doi: 10.1002/bies.201700148. Epub 2017 Dec 18.
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4
Capturing and Understanding the Dynamics and Heterogeneity of Gene Expression in the Living Cell.在活细胞中捕获和理解基因表达的动态和异质性。
Int J Mol Sci. 2020 Nov 5;21(21):8278. doi: 10.3390/ijms21218278.
5
Estrogen-dependent control and cell-to-cell variability of transcriptional bursting.雌激素依赖性控制和转录爆发的细胞间变异性。
Mol Syst Biol. 2018 Feb 23;14(2):e7678. doi: 10.15252/msb.20177678.
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Down Syndrome, Ageing and Epigenetics.唐氏综合征、衰老与表观遗传学
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Lack of evidence for increased transcriptional noise in aged tissues.缺乏证据表明衰老组织中转录噪声增加。
Elife. 2022 Dec 28;11:e80380. doi: 10.7554/eLife.80380.
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Extracting order from heterogeneity: A report on the EpiGeneSys workshop "Single Cell Epigenetics" in Montpellier, June 11-12, 2015.从异质性中提取规律:关于2015年6月11 - 12日在蒙彼利埃举办的EpiGeneSys研讨会“单细胞表观遗传学”的报告
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Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells.衰老影响小鼠肌肉干细胞中的 DNA 甲基化漂移和转录细胞间变异性。
Nat Commun. 2019 Sep 25;10(1):4361. doi: 10.1038/s41467-019-12293-4.
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Single-Cell and Single-Molecule Analysis of Gene Expression Regulation.基因表达调控的单细胞和单分子分析
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scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data.scShapes:单细胞 RNA 测序数据中识别分布形状的统计框架。
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