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共进化动力学塑造了细菌-噬菌体感染网络的结构。

Coevolutionary dynamics shape the structure of bacteria-phage infection networks.

机构信息

Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.

Center for the Study of Complex Systems, Ecology, and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan.

出版信息

Evolution. 2019 May;73(5):1001-1011. doi: 10.1111/evo.13731. Epub 2019 Apr 17.

Abstract

Coevolution-reciprocal evolutionary change among interacting species driven by natural selection-is thought to be an important force in shaping biodiversity. This ongoing process takes place within tangled networks of species interactions. In microbial communities, evolutionary change between hosts and parasites occurs at the same time scale as ecological change. Yet, we still lack experimental evidence of the role of coevolution in driving changes in the structure of such species interaction networks. Filling this gap is important because network structure influences community persistence through indirect effects. Here, we quantified experimentally to what extent coevolutionary dynamics lead to contrasting patterns in the architecture of bacteria-phage infection networks. Specifically, we look at the tendency of these networks to be organized in a nested pattern by which the more specialist phages tend to infect only a proper subset of those bacteria infected by the most generalist phages. We found that interactions between coevolving bacteria and phages become less nested over time under fluctuating dynamics, and more nested under arms race dynamics. Moreover, when coevolution results in high average infectivity, phages and bacteria differ more from each other over time under arms race dynamics than under fluctuating dynamics. The tradeoff between the fitness benefits of evolving resistance/infectivity traits and the costs of maintaining them might explain these differences in network structure. Our study shows that the interaction pattern between bacteria and phages at the community level depends on the way coevolution unfolds.

摘要

共进化——在自然选择的驱动下,相互作用的物种之间的共同进化变化——被认为是塑造生物多样性的重要力量。这个持续的过程发生在物种相互作用的复杂网络中。在微生物群落中,宿主和寄生虫之间的进化变化发生在与生态变化相同的时间尺度上。然而,我们仍然缺乏共进化在驱动这些物种相互作用网络结构变化中的作用的实验证据。填补这一空白很重要,因为网络结构通过间接效应影响群落的持久性。在这里,我们通过实验定量地研究了共进化动态在多大程度上导致了细菌-噬菌体感染网络结构的对比模式。具体来说,我们研究了这些网络是否倾向于以嵌套模式组织,其中更专业的噬菌体往往只感染最普遍的噬菌体感染的细菌的适当子集。我们发现,在波动动态下,随着时间的推移,共进化的细菌和噬菌体之间的相互作用变得不那么嵌套,而在军备竞赛动态下则变得更加嵌套。此外,当共进化导致平均感染率较高时,在军备竞赛动态下,噬菌体和细菌随时间的变化比在波动动态下彼此之间的差异更大。进化抗性/感染性特征的适应性收益与维持它们的成本之间的权衡可能解释了这些网络结构的差异。我们的研究表明,在群落水平上细菌和噬菌体之间的相互作用模式取决于共进化的方式。

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