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绘制微生物木质素代谢多样性图谱:来自 eLignin 数据库的经验。

Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database.

机构信息

Applied Microbiology, Department of Chemistry, Lund University, P.O. Box 124, SE-221 00, Lund, Sweden.

Department of Chemical Engineering, Lund University, Lund, Sweden.

出版信息

Appl Microbiol Biotechnol. 2019 May;103(10):3979-4002. doi: 10.1007/s00253-019-09692-4. Epub 2019 Apr 8.

Abstract

Lignin is a heterogeneous aromatic biopolymer and a major constituent of lignocellulosic biomass, such as wood and agricultural residues. Despite the high amount of aromatic carbon present, the severe recalcitrance of the lignin macromolecule makes it difficult to convert into value-added products. In nature, lignin and lignin-derived aromatic compounds are catabolized by a consortia of microbes specialized at breaking down the natural lignin and its constituents. In an attempt to bridge the gap between the fundamental knowledge on microbial lignin catabolism, and the recently emerging field of applied biotechnology for lignin biovalorization, we have developed the eLignin Microbial Database ( www.elignindatabase.com ), an openly available database that indexes data from the lignin bibliome, such as microorganisms, aromatic substrates, and metabolic pathways. In the present contribution, we introduce the eLignin database, use its dataset to map the reported ecological and biochemical diversity of the lignin microbial niches, and discuss the findings.

摘要

木质素是一种具有多相结构的芳香族生物聚合物,也是木质纤维素生物质(如木材和农业残余物)的主要成分。尽管存在大量的芳香族碳,但木质素大分子的严重顽固性使得其难以转化为高附加值产品。在自然界中,木质素和木质素衍生的芳香族化合物由专门分解天然木质素及其成分的微生物群落代谢。为了弥合微生物木质素代谢基础知识与新兴的木质素生物增值应用生物技术领域之间的差距,我们开发了 eLignin 微生物数据库(www.elignindatabase.com),这是一个开放的数据库,可对木质素文献中的数据进行索引,例如微生物、芳香族底物和代谢途径。在本研究中,我们介绍了 eLignin 数据库,使用其数据集来映射报道的木质素微生物生态位的生态和生化多样性,并讨论了相关发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/055d/6486533/b9be4066238f/253_2019_9692_Fig1_HTML.jpg

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