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蜘蛛并没有反复获得觅食网,而是反复失去觅食网。

Spiders did not repeatedly gain, but repeatedly lost, foraging webs.

作者信息

Coddington Jonathan A, Agnarsson Ingi, Hamilton Chris A, Bond Jason E

机构信息

Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., USA.

Department of Biology, University of Vermont, Burlington, VT, United States of America.

出版信息

PeerJ. 2019 Apr 4;7:e6703. doi: 10.7717/peerj.6703. eCollection 2019.

DOI:10.7717/peerj.6703
PMID:30976470
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6451839/
Abstract

Much genomic-scale, especially transcriptomic, data on spider phylogeny has accumulated in the last few years. These data have recently been used to investigate the diverse architectures and the origin of spider webs, concluding that the ancestral spider spun no foraging web, that spider webs evolved 10-14 times, and that the orb web evolved at least three times. These findings in fact result from a particular phylogenetic character coding strategy, specifically coding the of webs as logically equivalent, and homologous to, 10 other observable (i.e., not absent) web architectures. "Absence" of webs should be regarded as inapplicable data. To be analyzed properly by character optimization algorithms, it should be coded as "?" because these codes-or their equivalent-are handled differently by such algorithms. Additional problems include critical misspellings of taxon names from one analysis to the next (misspellings cause some optimization algorithms to drop terminals, which affects taxon sampling and results), and mistakes in spider natural history. In sum, the method causes character optimization algorithms to produce counter-intuitive results, and does not distinguish absence from secondary loss. Proper treatment of missing entries and corrected data instead imply that foraging webs are primitive for spiders and that webs have been lost ∼5-7 times, not gained 10-14 times. The orb web, specifically, may be homologous (originated only once) although lost 2-6 times.

摘要

在过去几年里,积累了大量关于蜘蛛系统发育的基因组规模数据,尤其是转录组数据。这些数据最近被用于研究蜘蛛网的多样结构及其起源,得出的结论是,原始蜘蛛不结觅食网,蜘蛛网进化了10 - 14次,而圆网至少进化了三次。事实上,这些发现源于一种特定的系统发育特征编码策略,具体而言,将网的“缺失”编码为在逻辑上等同于,且与其他10种可观察到的(即并非不存在的)网结构同源。网的“缺失”应被视为不适用的数据。为了能被特征优化算法正确分析,应将其编码为“?”,因为这些编码——或其等效形式——在这类算法中的处理方式不同。其他问题还包括从一次分析到下一次分析中分类单元名称的严重拼写错误(拼写错误会导致一些优化算法舍弃末端,从而影响分类单元抽样和结果),以及蜘蛛自然史方面的错误。总之,该方法导致特征优化算法产生违反直觉的结果,并且无法区分缺失与次生丢失。对缺失条目和校正数据的正确处理反而意味着觅食网是蜘蛛的原始特征,并且网已经丢失了约5 - 7次,而非进化了10 - 14次。具体而言,圆网可能是同源的(仅起源一次),尽管丢失了2 - 6次。

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