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谷子(Setaria italica)突变体库的构建与鉴定

Generation and Characterization of a Foxtail Millet () Mutant Library.

作者信息

Sun Jing, Luu Ngoc Sinh, Chen Zhenhua, Chen Bing, Cui Xuean, Wu Jinxia, Zhang Zhiguo, Lu Tiegang

机构信息

Biotechnology Research Institute, National Key Facility for Genetic Resources and Gene Improvement, the Chinese Academy of Agricultural Sciences, Beijing, China.

出版信息

Front Plant Sci. 2019 Mar 29;10:369. doi: 10.3389/fpls.2019.00369. eCollection 2019.

DOI:10.3389/fpls.2019.00369
PMID:31001298
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6455083/
Abstract

Foxtail millet () is attractive to plant scientists as a model plant because of several distinct characteristics, such as its short stature, rapid life cycle, sufficient seed production per plant, self-compatibility, true diploid nature, high photosynthetic efficiency, small genome size, and tolerance to abiotic and biotic stress. However, the study on the genetic resources of foxtail millet largely lag behind those of the other model plants such as , rice and maize. Mutagenized populations cannot only create new germplasm resources, but also provide materials for gene function research. In this manuscript, an ethyl methanesulfonate (EMS)-induced foxtail millet population comprising ∼15,000 individual M lines was established. Total 1353 independent lines with diverse abnormal phenotypes of leaf color, plant morphologies and panicle shapes were identified in M. Resequencing of sixteen randomly selected M plants showed an average estimated mutation density of 1 loci/213 kb. Moreover, we provided an example for rapid cloning of the gene by a map-based cloning method. A white panicle mutant, named as , exhibited significantly reduced chlorophyll (Chl) and carotenoid contents in leaf and panicle. Map-based cloning results showed an eight-base pair deletion located at the sixth exon of in LOC101786849, which caused the premature termination. encoded phytoene synthase. Moreover, the sequencing analysis and cross test verified that a white panicle mutant was an allelic mutant of . The filed phenotypic observation and gene cloning example showed that our foxtail millet EMS-induced mutant population would be used as an important resource for functional genomics studies of foxtail millet.

摘要

由于一些独特的特性,如植株矮小、生命周期短、单株种子产量高、自交亲和性、真正的二倍体性质、高光合效率、基因组小以及对非生物和生物胁迫的耐受性,谷子()作为模式植物吸引了植物科学家。然而,谷子遗传资源的研究在很大程度上落后于其他模式植物,如、水稻和玉米。诱变群体不仅可以创造新的种质资源,还能为基因功能研究提供材料。在本论文中,建立了一个由约15000个M1代单株组成的甲基磺酸乙酯(EMS)诱变谷子群体。在M1代中鉴定出总共1353个具有不同叶色、植株形态和穗型异常表型的独立株系。对16个随机选择的M1代植株进行重测序,显示平均估计突变密度为1个位点/213 kb。此外,我们提供了一个通过图位克隆法快速克隆基因的实例。一个名为的白穗突变体在叶片和穗中叶绿素(Chl)和类胡萝卜素含量显著降低。图位克隆结果显示,在LOC101786849的第六外显子处有一个8个碱基对的缺失,导致了提前终止。编码八氢番茄红素合酶。此外,测序分析和杂交试验证实白穗突变体是一个等位突变体。田间表型观察和基因克隆实例表明,我们的谷子EMS诱变突变体群体将作为谷子功能基因组学研究的重要资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/d5de62e65ea6/fpls-10-00369-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/8bad24c00960/fpls-10-00369-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/209fcf2dcbb6/fpls-10-00369-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/1d795491636a/fpls-10-00369-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/6840ff1999d1/fpls-10-00369-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/d5de62e65ea6/fpls-10-00369-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/8bad24c00960/fpls-10-00369-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/209fcf2dcbb6/fpls-10-00369-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/1d795491636a/fpls-10-00369-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/6840ff1999d1/fpls-10-00369-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e57a/6455083/d5de62e65ea6/fpls-10-00369-g005.jpg

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