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慢工出细活:病毒 DNA 包装的速度极限。

Slow and steady wins the race: physical limits on the rate of viral DNA packaging.

机构信息

Department of Diagnostic and Biological Sciences, University of Minnesota, 18-242 Moos Tower, 515 Delaware St SE, Minneapolis, MN 55455, United States.

出版信息

Curr Opin Virol. 2019 Jun;36:32-37. doi: 10.1016/j.coviro.2019.03.002. Epub 2019 Apr 17.

Abstract

During the assembly of dsDNA viruses such as the tailed bacteriophages and herpesviruses, the viral chromosome is compacted to near crystalline density inside a preformed head shell. DNA translocation is driven by powerful ring ATPase motors that couple ATP binding, hydrolysis, and release to force generation and movement. Studies of the motor of the bacteriophage phi29 have revealed a complex mechanochemistry behind this process that slows as the head fills. Recent studies of the physical behavior of packaging DNA suggest that surprisingly long-time scales of relaxation of DNA inside the head and jamming phenomena during packaging create the physical need for regulation of the rate of packaging. Studies of DNA packaging in viral systems have, therefore, revealed fundamental insight into the complex behavior of DNA and the need for biological systems to accommodate these physical constraints.

摘要

在 dsDNA 病毒(如长尾噬菌体和疱疹病毒)的组装过程中,病毒染色体在预先形成的头部壳内被压缩到近乎结晶密度。DNA 易位由强大的环 ATP 酶马达驱动,该马达将 ATP 结合、水解和释放与力的产生和运动偶联。对噬菌体 phi29 马达的研究揭示了这个过程背后复杂的机械化学,随着头部的填充,这个过程会减缓。最近对包装 DNA 物理行为的研究表明,令人惊讶的是,头部内 DNA 的弛豫和包装过程中的阻塞现象需要很长时间尺度,这为包装速度的调节创造了物理需求。因此,对病毒系统中 DNA 包装的研究揭示了 DNA 复杂行为的基本认识,以及生物系统适应这些物理限制的必要性。

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本文引用的文献

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Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.大型双链 DNA 病毒的 DNA 包装机制。
Annu Rev Virol. 2015 Nov;2(1):351-78. doi: 10.1146/annurev-virology-100114-055212. Epub 2015 Sep 10.
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Headful DNA packaging: bacteriophage SPP1 as a model system.头部填充 DNA 包装:噬菌体 SPP1 作为模型系统。
Virus Res. 2013 May;173(2):247-59. doi: 10.1016/j.virusres.2013.01.021. Epub 2013 Feb 16.
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Genome gating in tailed bacteriophage capsids.尾部噬菌体衣壳中的基因组门控。
Adv Exp Med Biol. 2012;726:585-600. doi: 10.1007/978-1-4614-0980-9_25.
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Single-molecule studies of viral DNA packaging.单分子水平上的病毒 DNA 包装研究。
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