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两个分离株的高连续性全基因组序列和基因注释资源。

High Contiguity Whole Genome Sequence and Gene Annotation Resource for Two Isolates.

机构信息

Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.

National Institute of Horticultural and Herbal Science (NIHHS), Rural Development Administration (RDA), Naju, Republic of Korea.

出版信息

Mol Plant Microbe Interact. 2019 Sep;32(9):1091-1094. doi: 10.1094/MPMI-03-19-0072-A. Epub 2019 Aug 1.

DOI:10.1094/MPMI-03-19-0072-A
PMID:31008683
Abstract

is a fungal pathogen that causes Asian pear scab disease. This pathogen is of particular importance in Northeast Asian countries, where Asian pears are grown industrially. Scab disease in Asian pear is currently controlled by fungicide spraying and this situation calls for developing scab resistant cultivars. High-quality genome data are therefore required for in-depth comparative genome analysis of different isolates of and , a closely related species, which only infects European pear plants. Here, we report the high-contiguity whole genome assembly of two isolates, which is expected to enable genome comparisons for identification of the genes involved in host range determination of .

摘要

是一种真菌病原体,可导致亚洲梨疮痂病。这种病原体在亚洲梨被大规模工业化种植的东北亚国家尤为重要。目前,防治亚洲梨疮痂病主要通过喷洒杀菌剂,但这需要开发具有抗疮痂病能力的品种。因此,需要高质量的基因组数据来深入比较不同 和 (一种仅感染欧洲梨树的近缘种)分离株的基因组。在这里,我们报告了两个 分离株的高连续性全基因组组装,这有望实现基因组比较,以鉴定参与 宿主范围决定的基因。

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引用本文的文献

1
The Venturia inaequalis effector repertoire is dominated by expanded families with predicted structural similarity, but unrelated sequence, to avirulence proteins from other plant-pathogenic fungi.畸形外囊菌效应子组库主要由结构相似、序列无关的扩展家族组成,与其他植物病原真菌的无毒蛋白具有预测的结构相似性。
BMC Biol. 2022 Nov 3;20(1):246. doi: 10.1186/s12915-022-01442-9.
2
Whole Genome Enabled Phylogenetic and Secretome Analyses of Two Isolates.两个分离株的全基因组系统发育和分泌蛋白组分析
Plant Pathol J. 2020 Feb;36(1):98-105. doi: 10.5423/PPJ.NT.10.2019.0258. Epub 2020 Feb 1.