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考虑亲属抽样揭示了塔斯马尼亚和新西兰狭纹虎鲨的遗传连通性。

Accounting for kin sampling reveals genetic connectivity in Tasmanian and New Zealand school sharks, .

作者信息

Devloo-Delva Floriaan, Maes Gregory E, Hernández Sebastián I, Mcallister Jaime D, Gunasekera Rasanthi M, Grewe Peter M, Thomson Robin B, Feutry Pierre

机构信息

Oceans and Atmosphere CSIRO Hobart Tasmania Australia.

School of Natural Sciences - Quantitative Marine Science University of Tasmania Hobart Tasmania Australia.

出版信息

Ecol Evol. 2019 Apr 1;9(8):4465-4472. doi: 10.1002/ece3.5012. eCollection 2019 Apr.

Abstract

UNLABELLED

Fishing represents a major problem for conservation of chondrichthyans, with a quarter of all species being overexploited. School sharks, , are targeted by commercial fisheries in Australia and New Zealand. The Australian stock has been depleted to below 20% of its virgin biomass, and the species is recorded as Conservation Dependent within Australia. Individuals are known to move between both countries, but it is disputed whether the stocks are reproductively linked. Accurate and unbiased determination of stock and population connectivity is crucial to inform effective management. In this study, we assess the genetic composition and population connectivity between Australian and New Zealand school sharks using genome-wide SNPs, while accounting for non-random kin sampling. Between 2009 and 2013, 88 neonate and juvenile individuals from Tasmanian and New Zealand nurseries were collected and genotyped. Neutral loci were analyzed to detect fine-scale signals of reproductive connectivity. Seven full-sibling groups were identified and removed for unbiased analysis. Based on 6,587 neutral SNPs, pairwise genetic differentiation from Tasmanian and New Zealand neonates was non-significant (  = 0.0003, CI = [-0.0002, 0.0009],  = 0.1163;  = 0.0006 ± 0.0002). This pattern was supported by clustering results. In conclusion, we show a significant effect of non-random sampling of kin and identify fine-scale reproductive connectivity between Australian and New Zealand school sharks.

OPEN RESEARCH BADGES

This article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://doi.org/10.5061/dryad.pd8612j.

摘要

未标注

捕鱼是软骨鱼类保护面临的一个主要问题,所有物种中有四分之一被过度开发。肩章鲨在澳大利亚和新西兰是商业渔业的捕捞对象。澳大利亚的种群数量已减少到原始生物量的20%以下,该物种在澳大利亚被列为依赖保护物种。已知个体在两国之间移动,但种群是否存在生殖联系仍存在争议。准确且无偏差地确定种群和种群连通性对于有效管理至关重要。在本研究中,我们使用全基因组单核苷酸多态性(SNPs)评估澳大利亚和新西兰肩章鲨之间的遗传组成和种群连通性,同时考虑非随机亲缘抽样。在2009年至2013年期间,从塔斯马尼亚和新西兰的育苗场收集了88只新生和幼年个体并进行基因分型。分析中性位点以检测生殖连通性的精细尺度信号。识别并移除了7个全同胞组以进行无偏差分析。基于6587个中性SNPs,塔斯马尼亚和新西兰新生个体之间的成对遗传分化不显著( = 0.0003,置信区间 = [-0.0002, 0.0009], = 0.1163; = 0.0006 ± 0.0002)。聚类结果支持了这一模式。总之,我们展示了亲缘非随机抽样的显著影响,并识别出澳大利亚和新西兰肩章鲨之间的精细尺度生殖连通性。

开放研究徽章

本文因公开提供重现报告结果所需的可数字共享数据而获得开放数据徽章。数据可在https://doi.org/10.5061/dryad.pd8612j获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c833/6476751/36e203d130ed/ECE3-9-4465-g001.jpg

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