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基于 RNA 测序的全转录组分析鉴定了脂多糖诱导的大鼠附睾炎炎性反应的关键基因。

Comprehensive transcriptome analysis based on RNA sequencing identifies critical genes for lipopolysaccharide-induced epididymitis in a rat model.

机构信息

Department of Urology, Shanghai Institute of Andrology, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200001, China.

出版信息

Asian J Androl. 2019 Nov-Dec;21(6):605-611. doi: 10.4103/aja.aja_21_19.

DOI:10.4103/aja.aja_21_19
PMID:31044753
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6859662/
Abstract

Epididymitis is a commonly diagnosed disease associated with male infertility. However, little is known about the molecules that are involved in its development. This study was to identify critical genes associated with lipopolysaccharide-induced epididymitis and analyze the molecular mechanism of epididymitis through RNA sequencing. Experimental epididymitis models were generated by administering male Sprague-Dawley rats' lipopolysaccharide. A total of 1378 differentially expressed genes, including 531 upregulated and 847 downregulated genes, were identified in the epididymitis model rats compared with those in sham-operated rats by RNA sequencing. Functional enrichment analyses suggested that the upregulated genes were markedly enriched in inflammation-related biological processes, as well as in the tumor necrosis factor (TNF) signaling pathway, cytokine-cytokine receptor interactions, complement and coagulation cascades, and in the chemokine signaling pathway. Four downregulated genes (collagen type XXVIII alpha 1 chain [Col28α1], cyclin-dependent kinase-like 1 [Cdkl1], phosphoserine phosphatase [Psph], and fatty acid desaturase 2 [Fads2]) and ten upregulated genes (CCAAT/enhancer-binding protein beta [Cebpβ], C-X-C motif chemokine receptor 2 [Cxcr2], interleukin 11 [Il11], C-C motif chemokine ligand 20 [Ccl20], nuclear factor-kappa-B inhibitor alpha [Nfkbiα], claudin 4 [Cldn4], matrix metallopeptidase 9 [Mmp9], heat shock 70 kDa protein 8 [Hspa8], intercellular cell adhesion molecule-1 [Icam1], and Jun) were successfully confirmed by real-time polymerase chain reaction. Western blot demonstrated that CDKL1 was decreased, while MMP9 and NFKBIA were increased in the experimental model group compared with those in the sham-operated group. Our study sheds new light on the understanding of the early response of the epididymis during bacterial epididymitis.

摘要

附睾炎是一种常见的与男性不育相关的疾病。然而,目前对于参与其发生发展的分子知之甚少。本研究旨在通过 RNA 测序鉴定与脂多糖诱导的附睾炎相关的关键基因,并分析附睾炎的分子机制。通过给予雄性 Sprague-Dawley 大鼠脂多糖建立实验性附睾炎模型。与假手术组大鼠相比,RNA 测序鉴定出模型组大鼠附睾中有 1378 个差异表达基因,包括 531 个上调基因和 847 个下调基因。功能富集分析表明,上调基因显著富集于炎症相关的生物学过程,以及肿瘤坏死因子 (TNF) 信号通路、细胞因子-细胞因子受体相互作用、补体和凝血级联、趋化因子信号通路。下调基因(XXVIII 型胶原α 1 链 [Col28α1]、细胞周期蛋白依赖性激酶样 1 [Cdkl1]、磷酸丝氨酸磷酸酶 [Psph] 和脂肪酸去饱和酶 2 [Fads2])有 4 个,上调基因(CCAAT/增强子结合蛋白β [Cebpβ]、C-X-C 基序趋化因子受体 2 [Cxcr2]、白细胞介素 11 [Il11]、C-C 基序趋化因子配体 20 [Ccl20]、核因子-κB 抑制因子α [Nfkbiα]、闭合蛋白 4 [Cldn4]、基质金属蛋白酶 9 [Mmp9]、热休克蛋白 70kDa 蛋白 8 [Hspa8]、细胞间黏附分子 1 [Icam1]和 Jun)有 10 个,通过实时聚合酶链反应得到了成功验证。Western blot 结果显示,与假手术组相比,实验组 CDKL1 减少,MMP9 和 NFKBIA 增加。本研究为理解细菌性附睾炎时附睾的早期反应提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/0d2e06ce2f1d/AJA-21-605-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/29fa463902e1/AJA-21-605-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/aaa3148d1af4/AJA-21-605-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/3fd18d3afacd/AJA-21-605-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/78eea3176ace/AJA-21-605-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/0d2e06ce2f1d/AJA-21-605-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/29fa463902e1/AJA-21-605-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/aaa3148d1af4/AJA-21-605-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/3fd18d3afacd/AJA-21-605-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a539/6859662/78eea3176ace/AJA-21-605-g004.jpg
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