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常规使用下一代测序进行基因分型时检测到转移性结直肠癌的罕见突变谱。

Uncommon mutational profiles of metastatic colorectal cancer detected during routine genotyping using next generation sequencing.

机构信息

Institut de Cancérologie de Lorraine, Service de Biopathologie, 54519, Vandoeuvre les Nancy, France.

Department of Computer Science, University College London, Gower Street, London, WC1E 6BT, United Kingdom.

出版信息

Sci Rep. 2019 May 8;9(1):7083. doi: 10.1038/s41598-019-43646-0.

DOI:10.1038/s41598-019-43646-0
PMID:31068650
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6506598/
Abstract

RAS genotyping is mandatory to predict anti-EGFR monoclonal antibodies (mAbs) therapy resistance and BRAF genotyping is a relevant prognosis marker in patients with metastatic colorectal cancer. Although the role of hotspot mutations is well defined, the impact of uncommon mutations is still unknown. In this study, we aimed to discuss the potential utility of detecting uncommon RAS and BRAF mutation profiles with next-generation sequencing. A total of 779 FFPE samples from patients with metastatic colorectal cancer with valid NGS results were screened and 22 uncommon mutational profiles of KRAS, NRAS and BRAF genes were selected. In silico prediction of mutation impact was then assessed by 2 predictive scores and a structural protein modelling. Three samples carry a single KRAS non-hotspot mutation, one a single NRAS non-hotspot mutation, four a single BRAF non-hotspot mutation and fourteen carry several mutations. This in silico study shows that some non-hotspot RAS mutations seem to behave like hotspot mutations and warrant further examination to assess whether they should confer a resistance to anti-EGFR mAbs therapy for patients bearing these non-hotspot RAS mutations. For BRAF gene, non-V600E mutations may characterise a novel subtype of mCRC with better prognosis, potentially implying a modification of therapeutic strategy.

摘要

RAS 基因分型对于预测抗 EGFR 单克隆抗体(mAbs)治疗耐药性至关重要,BRAF 基因分型是转移性结直肠癌患者的重要预后标志物。虽然热点突变的作用已经明确,但罕见突变的影响仍不清楚。在这项研究中,我们旨在讨论使用下一代测序检测罕见 RAS 和 BRAF 突变谱的潜在效用。筛选了 779 例有有效 NGS 结果的转移性结直肠癌患者的 FFPE 样本,选择了 KRAS、NRAS 和 BRAF 基因的 22 种罕见突变谱。然后通过 2 种预测评分和结构蛋白建模评估突变影响的预测。三个样本携带单个 KRAS 非热点突变,一个样本携带单个 NRAS 非热点突变,四个样本携带单个 BRAF 非热点突变,14 个样本携带多个突变。这项计算机研究表明,一些非热点 RAS 突变似乎表现为热点突变,值得进一步研究,以评估它们是否应该使携带这些非热点 RAS 突变的患者对抗 EGFR mAbs 治疗产生耐药性。对于 BRAF 基因,非 V600E 突变可能是一种具有更好预后的新型 mCRC 亚型,可能暗示治疗策略的改变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3a/6506598/751e4b99f79e/41598_2019_43646_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3a/6506598/9ddcf638cdb4/41598_2019_43646_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3a/6506598/751e4b99f79e/41598_2019_43646_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3a/6506598/9ddcf638cdb4/41598_2019_43646_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3a/6506598/751e4b99f79e/41598_2019_43646_Fig2_HTML.jpg

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